RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB6584" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6584 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25661230 25661230 PRJEB6584o_S_NODE_64442_length_160_cov_4.296000_g64334_i0 PRJEB6584 64442 160 4.296 6.8736 Patiria miniata 46514 Echinodermata other_Eukaryota 54.7 0.004   NTclustered gi|1944916053|ref|XM_038214868.1| 46514 g64334 i0 100 0.18125 29 0 18 0 32 60 912 884 PREDICTED: Patiria miniata nucleoplasmin-like protein ANO39 (LOC119739794), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
25795722 25795722 PRJEB6584e_S_NODE_891_length_268_cov_3.901288_g876_i0 PRJEB6584 891 268 3.901288 10.45545184 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 176 1.4e-39   NTclustered gi|1752383407|ref|XM_030994820.1| 7668 g876 i0 84.066 48.839552238806 182 29 68 0 66 247 1498 1317 PREDICTED: Strongylocentrotus purpuratus tubulin alpha-1 chain-like (LOC115928089), mRNA blastn 13089 176 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
26160745 26160745 PRJEB6584o_S_NODE_7997_length_303_cov_5.220149_g7889_i0 PRJEB6584 7997 303 5.220149 15.81705147 Echinoidea 7625 Echinodermata other_Eukaryota 185 2.6699999999999994e-42   NTclustered gi|2037967640|ref|XM_041629424.1| 7654 g7889 i0 88.312 44.6963696369637 154 18 51 0 149 302 1440 1287 PREDICTED: Lytechinus variegatus tubulin alpha-3 chain-like (LOC121431736), mRNA blastn 13543 185 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;