RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB6584" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6584 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25524556 25524556 PRJEB6584o_S_NODE_18169_length_210_cov_154.194286_g18061_i0 PRJEB6584 18169 210 154.194286 323.8080006 Rodmanochytrium sp. 2750701 Fungi Fungi 95.3 3.02e-15   NTclustered gi|1866582804|gb|MT730979.1| 2750701 g18061 i0 93.75 25.8857142857143 64 2 30 1 1 64 4013 3952 Rodmanochytrium sp. isolate UM1564 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5436 95.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Rodmanochytrium Rodmanochytrium sp.
25797496 25797496 PRJEB6584o_S_NODE_8875_length_290_cov_1.925490_g8767_i0 PRJEB6584 8875 290 1.92549 5.583921 uncultured Chytridiomycota 175247 Fungi Fungi 272 1.89e-68   NTclustered gi|2465121831|gb|OQ687232.1| 175247 g8767 i0 88.839 76.4 224 22 77 3 57 280 218 438 Uncultured Chytridiomycota isolate UMPB-141 small subunit ribosomal RNA gene, partial sequence blastn 22156 272 1 Eukaryota Opisthokonta Fungi Chytridiomycota         uncultured Chytridiomycota

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;