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contig_metadata

23 rows where analysis = "blastn", bioproject = "PRJEB6584" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 23 ✖

bioproject 1

  • PRJEB6584 · 23 ✖

analysis 1

  • blastn · 23 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25523363 25523363 PRJEB6584a_S_NODE_2289_length_244_cov_2.693780_g2269_i0 PRJEB6584 2289 244 2.69378 6.5728232 Human immunodeficiency virus 1 11676 Viruses Viruses 335 1.9499999999999992e-87   NTclustered gi|451168449|gb|KC156239.1| 11676 g2269 i0 91.393 100.360655737705 244 21 100 0 1 244 2825 2582 HIV-1 isolate CH269.w24.e28 from Malawi pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; and nonfunctional env protein (env) and nonfunctional nef protein (nef) genes, complete sequence blastn 24488 335 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25523366 25523366 PRJEB6584a_S_NODE_2401_length_239_cov_1.200980_g2381_i0 PRJEB6584 2401 239 1.20098 2.8703422 Human immunodeficiency virus 1 11676 Viruses Viruses 311 3.21e-80   NTclustered gi|2438301489|gb|ON862677.1| 11676 g2381 i0 91.228 95.4142259414226 228 20 95 0 12 239 6706 6933 HIV-1 isolate 198-7-2-TF from South Africa gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef gene, complete sequence blastn 22804 311 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25523415 25523415 PRJEB6584a_S_NODE_4177_length_193_cov_1.879747_g4157_i0 PRJEB6584 4177 193 1.879747 3.62791171 Human immunodeficiency virus 1 11676 Viruses Viruses 296 6.96e-76   NTclustered gi|1829045908|gb|MT191040.1| 11676 g4157 i0 94.301 100 193 11 100 0 1 193 1344 1152 HIV-1 isolate 9247_wk-2_pl4_G6 from USA, complete genome blastn 19300 296 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25523798 25523798 PRJEB6584g_S_NODE_73_length_553_cov_1724.465251_g64_i0 PRJEB6584 73 553 1724.465251 9536.29283803 Human immunodeficiency virus 1 11676 Viruses Viruses 128 8.789999999999999e-25   NTclustered gi|2859928216|gb|PQ511684.1| 11676 g64 i0 98.611 12.631103074141 72 1 13 0 25 96 9539 9468 HIV-1 isolate GB1LV100191 from USA, complete genome blastn 6985 128 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25616321 25616321 PRJEB6584q_S_NODE_121_length_284_cov_26020.212851_g120_i0 PRJEB6584 121 284 26020.212851 73897.40449684 Viruses 10239 Viruses Viruses 106 1.98e-18   NTclustered gi|2859928216|gb|PQ511684.1| 11676 g120 i0 100 20.8028169014085 57 0 20 0 1 57 9524 9468 HIV-1 isolate GB1LV100191 from USA, complete genome blastn 5908 106 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25659353 25659353 PRJEB6584a_S_NODE_6058_length_172_cov_5.014599_g6038_i0 PRJEB6584 6058 172 5.014599 8.62511028 Human immunodeficiency virus 1 11676 Viruses Viruses 154 3.84e-33   NTclustered gi|695935608|gb|KM190314.1| 11676 g6038 i0 83.237 98.296511627907 173 24 100 4 1 172 1100 932 HIV-1 isolate 2013.48_Inc_S542000_14_KXM01 from Botswana envelope glycoprotein (env) gene, partial cds blastn 16907 154 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25660961 25660961 PRJEB6584o_S_NODE_3826_length_391_cov_3968.103933_g3718_i0 PRJEB6584 3826 391 3968.103933 15515.28637803 Human immunodeficiency virus 1 11676 Viruses Viruses 113 1.69e-20   NTclustered gi|2859928216|gb|PQ511684.1| 11676 g3718 i0 97.059 17.613810741688 68 0 17 2 325 391 9466 9532 HIV-1 isolate GB1LV100191 from USA, complete genome blastn 6887 113 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25795417 25795417 PRJEB6584a_S_NODE_8755_length_156_cov_1.123967_g8735_i0 PRJEB6584 8755 156 1.123967 1.75338852 Human immunodeficiency virus 1 11676 Viruses Viruses 163 5.69e-36   NTclustered gi|869135229|gb|KP718924.1| 11676 g8735 i0 85.535 92.1794871794872 159 20 100 1 1 156 6764 6922 HIV-1 isolate 228-10 from Cameroon, complete genome blastn 14380 163 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25887831 25887831 PRJEB6584e_S_NODE_1387_length_229_cov_3.530928_g1372_i0 PRJEB6584 1387 229 3.530928 8.08582512 root 1 Root_unresolved Root_unresolved 54.7 0.006   NTclustered gi|2859928216|gb|PQ511684.1| 11676 g1372 i0 94.444 2.41484716157205 36 1 15 1 1 35 9495 9460 HIV-1 isolate GB1LV100191 from USA, complete genome blastn 553 54.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
26024165 26024165 PRJEB6584i_S_NODE_2420_length_216_cov_213.651934_g2408_i0 PRJEB6584 2420 216 213.651934 461.48817744 root 1 Root_unresolved Root_unresolved 97.1 8.68e-16   NTclustered gi|2859928216|gb|PQ511684.1| 11676 g2408 i0 98.182 27.0046296296296 55 1 25 0 1 55 9522 9468 HIV-1 isolate GB1LV100191 from USA, complete genome blastn 5833 97.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
26067492 26067492 PRJEB6584a_S_NODE_1109_length_330_cov_4.925424_g1089_i0 PRJEB6584 1109 330 4.925424 16.2538992 Human immunodeficiency virus 1 11676 Viruses Viruses 510 4.26e-140   NTclustered gi|15054647|gb|AF286245.1|AF286245 11676 g1089 i0 94.801 95.9636363636364 327 17 99 0 3 329 393 67 HIV-1 isolate 95CY034-11e from Cyprus envelope glycoprotein (env) gene, partial cds blastn 31668 510 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
26067543 26067543 PRJEB6584a_S_NODE_2173_length_250_cov_3.460465_g2153_i0 PRJEB6584 2173 250 3.460465 8.6511625 Human immunodeficiency virus 1 11676 Viruses Viruses 407 4.1899999999999994e-109   NTclustered gi|578897666|gb|KC899079.1| 11676 g2153 i0 96 100.308 250 10 100 0 1 250 7722 7473 HIV-1 isolate BAV499 from Italy, complete genome blastn 25077 407 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
26067627 26067627 PRJEB6584a_S_NODE_5157_length_180_cov_1.131034_g5137_i0 PRJEB6584 5157 180 1.131034 2.0358612 Human immunodeficiency virus 1 11676 Viruses Viruses 311 2.28e-80   NTclustered gi|56193022|gb|AY727523.1| 11676 g5137 i0 97.778 99.9777777777778 180 4 100 0 1 180 4798 4977 HIV-1 isolate 04BR021 from Brazil gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds blastn 17996 311 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
26067655 26067655 PRJEB6584a_S_NODE_7453_length_164_cov_1.860465_g7433_i0 PRJEB6584 7453 164 1.860465 3.0511626 Human immunodeficiency virus 1 11676 Viruses Viruses 254 3.5e-63   NTclustered gi|32765867|gb|AY304833.1| 11676 g7433 i0 94.512 99.9268292682927 164 9 100 0 1 164 1061 1224 HIV-1 isolate 00ET669.154.122 from Ethiopia gag protein (gag) gene, partial cds blastn 16388 254 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
26203956 26203956 PRJEB6584a_S_NODE_5950_length_173_cov_2.891304_g5930_i0 PRJEB6584 5950 173 2.891304 5.00195592 Human immunodeficiency virus 1 11676 Viruses Viruses 241 2.8900000000000007e-59   NTclustered gi|27948751|gb|AY123888.1| 11676 g5930 i0 93.333 97.7456647398844 165 8 94 1 4 165 644 480 Human immunodeficiency virus 1 isolate TZMoE47448 from Tanzania envelope glycoprotein (env) gene, partial cds blastn 16910 241 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
26203966 26203966 PRJEB6584a_S_NODE_6782_length_168_cov_2.165414_g6762_i0 PRJEB6584 6782 168 2.165414 3.63789552 Human immunodeficiency virus 1 11676 Viruses Viruses 215 1.7e-51   NTclustered gi|572435790|gb|KF374009.1| 11676 g6762 i0 89.941 95.3035714285714 169 14 99 1 1 166 1207 1039 HIV-1 isolate 041_20444062_3_3 from Botswana envelope glycoprotein (env) gene, partial cds blastn 16011 215 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
26296522 26296522 PRJEB6584p_S_NODE_1782_length_244_cov_1579.822967_g1751_i0 PRJEB6584 1782 244 1579.822967 3854.76803948 Viruses 10239 Viruses Viruses 69.4 2.19e-7   NTclustered gi|2859928216|gb|PQ511684.1| 11676 g1751 i0 100 33.5122950819672 37 0 29 0 208 244 9467 9503 HIV-1 isolate GB1LV100191 from USA, complete genome blastn 8177 69.4 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
26339637 26339637 PRJEB6584a_S_NODE_1599_length_284_cov_4.903614_g1579_i0 PRJEB6584 1599 284 4.903614 13.92626376 Human immunodeficiency virus 1 11676 Viruses Viruses 464 2.8399999999999998e-126   NTclustered gi|259127638|gb|GQ431755.1| 11676 g1579 i0 96.441 98.9366197183099 281 10 99 0 1 281 696 976 HIV-1 clone 1891 from Kenya nonfunctional gag protein (gag) gene, complete sequence blastn 28098 464 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
26339659 26339659 PRJEB6584a_S_NODE_2223_length_247_cov_3.382075_g2203_i0 PRJEB6584 2223 247 3.382075 8.35372525 Human immunodeficiency virus 1 11676 Viruses Viruses 351 1.97e-92   NTclustered gi|196051360|gb|EU863429.1| 11676 g2203 i0 92.975 95.0364372469636 242 14 98 2 1 242 1391 1153 HIV-1 isolate 541-03-6 from South Africa envelope glycoprotein (env) gene, partial cds blastn 23474 351 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
26339734 26339734 PRJEB6584a_S_NODE_5967_length_173_cov_1.405797_g5947_i0 PRJEB6584 5967 173 1.405797 2.43202881 Human immunodeficiency virus 1 11676 Viruses Viruses 270 3.69e-68   NTclustered gi|1954998980|gb|MT369951.1| 11676 g5947 i0 94.22 98.9306358381503 173 10 100 0 1 173 1055 1227 HIV-1 isolate RU_ERS_1032_2016 from Russia, complete genome blastn 17115 270 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
26339743 26339743 PRJEB6584a_S_NODE_6607_length_169_cov_1.089552_g6587_i0 PRJEB6584 6607 169 1.089552 1.84134288 Human immunodeficiency virus 1 11676 Viruses Viruses 272 9.95e-69   NTclustered gi|34421528|gb|AY282151.1| 11676 g6587 i0 98.077 92.4201183431953 156 3 92 0 14 169 164 9 HIV-1 clone SUMA278-118 gag protein (gag) gene, partial cds blastn 15619 272 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
26475932 26475932 PRJEB6584a_S_NODE_1920_length_262_cov_3.185022_g1900_i0 PRJEB6584 1920 262 3.185022 8.34475764 Human immunodeficiency virus 1 11676 Viruses Viruses 342 1.2699999999999996e-89   NTclustered gi|238684569|gb|FJ977094.1| 11676 g1900 i0 93.133 87.9236641221374 233 16 89 0 1 233 1481 1249 HIV-1 clone C27.42 from Malawi envelope glycoprotein (env) gene, complete cds blastn 23036 342 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
26568069 26568069 PRJEB6584e_S_NODE_712_length_283_cov_107.681452_g697_i0 PRJEB6584 712 283 107.681452 304.73850916 root 1 Root_unresolved Root_unresolved 124 5.46e-24   NTclustered gi|2859928216|gb|PQ511684.1| 11676 g697 i0 98.571 24.8056537102473 70 1 25 0 7 76 9538 9469 HIV-1 isolate GB1LV100191 from USA, complete genome blastn 7020 124 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;