RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB6584" and tax_clade = "CRuMs"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • CRuMs · 4 ✖

bioproject 1

  • PRJEB6584 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25659673 25659673 PRJEB6584e_S_NODE_170_length_435_cov_19.155000_g155_i0 PRJEB6584 170 435 19.155 83.32425 Diphylleia rotans 190327 Root_unresolved Root_unresolved 97.1 1.91e-15   NTclustered gi|1200177731|gb|MF039365.1| 190327 g155 i0 92.537 16.0689655172414 67 5 15 0 228 294 4253 4319 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6990 97.1 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
25932009 25932009 PRJEB6584g_S_NODE_2932_length_223_cov_3.148936_g2920_i0 PRJEB6584 2932 223 3.148936 7.02212728 Diphylleia rotans 190327 Root_unresolved Root_unresolved 97.1 9.02e-16   NTclustered gi|1200177731|gb|MF039365.1| 190327 g2920 i0 92.537 31.3452914798206 67 5 30 0 91 157 4319 4253 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6990 97.1 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
26204291 26204291 PRJEB6584f_S_NODE_182_length_409_cov_11.441176_g176_i0 PRJEB6584 182 409 11.441176 46.79440984 Diphylleia rotans 190327 Root_unresolved Root_unresolved 97.1 1.79e-15   NTclustered gi|1200177731|gb|MF039365.1| 190327 g176 i0 92.537 17.0904645476773 67 5 16 0 221 287 4253 4319 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6990 97.1 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
26476461 26476461 PRJEB6584i_S_NODE_176_length_449_cov_41.328502_g165_i0 PRJEB6584 176 449 41.328502 185.56497398 Diphylleia rotans 190327 Root_unresolved Root_unresolved 97.1 1.98e-15   NTclustered gi|1200177731|gb|MF039365.1| 190327 g165 i0 92.537 15.5679287305123 67 5 15 0 165 231 4319 4253 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6990 97.1 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;