RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJEB65329" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB65329 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
130067 130067 PRJEB65329_S_NODE_16721_length_159_cov_2.153846_g16559_i0 PRJEB65329 16721 159 2.153846 3.42461514 Micromonas pusilla 38833 Plants Plants 73.1 1.01e-8   NTclustered gi|303287908|ref|XM_003063197.1| 564608 g16559 i0 93.75 0.30188679245283 48 3 30 0 3 50 346 393 Micromonas pusilla CCMP1545 uncharacterized protein (MICPUCDRAFT_22237), partial mRNA blastn 48 73.1 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas pusilla
3956129 3956129 PRJEB65329_S_NODE_14444_length_173_cov_2.381944_g14282_i0 PRJEB65329 14444 173 2.381944 4.12076312 Chlorella variabilis 554065 Plants Plants 121 3.929999999999999e-23   NTclustered gi|552809829|ref|XM_005842979.1| 554065 g14282 i0 93.75 1.29479768786127 80 5 46 0 75 154 305 226 Chlorella variabilis hypothetical protein (CHLNCDRAFT_55429) mRNA, complete cds blastn 224 121 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
6508229 6508229 PRJEB65329_S_NODE_11986_length_194_cov_2.987879_g11824_i0 PRJEB65329 11986 194 2.987879 5.79648526 Micromonas commoda 296587 Plants Plants 137 4.49e-28   NTclustered gi|255087097|ref|XM_002505426.1| 296587 g11824 i0 81.215 35.4587628865979 181 24 91 6 17 192 866 691 Micromonas commoda predicted protein mRNA blastn 6879 137 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
10333298 10333298 PRJEB65329_S_NODE_8009_length_254_cov_9.217778_g7847_i0 PRJEB65329 8009 254 9.217778 23.41315612 Monoraphidium neglectum 145388 Plants Plants 220 5.97e-53   NTclustered gi|926773395|ref|XM_014039718.1| 145388 g7847 i0 88.108 65.6417322834646 185 22 73 0 3 187 362 546 Monoraphidium neglectum ADP-ribosylation factor 1 mRNA blastn 16673 220 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
15432647 15432647 PRJEB65329_S_NODE_7493_length_266_cov_17.016878_g7331_i0 PRJEB65329 7493 266 17.016878 45.26489548 Micromonas commoda 296587 Plants Plants 267 7.979999999999999e-67   NTclustered gi|255081575|ref|XM_002507964.1| 296587 g7331 i0 84.906 96.609022556391 265 39 99 1 2 265 712 976 Micromonas commoda alpha tubulin 2 (TUA2), mRNA blastn 25698 267 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
17571778 17571778 PRJEB65329_S_NODE_15754_length_164_cov_3.029630_g15592_i0 PRJEB65329 15754 164 3.02963 4.9685932 Eukaryota 2759 Plants Plants 60.2 8.18e-5   NTclustered gi|824555904|dbj|AB971117.1| 3055 g15592 i0 100 4.26829268292683 32 0 20 0 107 138 3382 3351 Chlamydomonas reinhardtii TAR1 gene for TAG accumulation regulator 1 protein, complete sequence, strain: C9 blastn 700 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
19255597 19255597 PRJEB65329_S_NODE_14096_length_175_cov_9.226027_g13934_i0 PRJEB65329 14096 175 9.226027 16.14554725 Mantoniella tinhauana 3097027 Plants Plants 56.5 0.001   NTclustered gi|2735153281|gb|CP140066.1| 3097027 g13934 i0 100 0.514285714285714 30 0 17 0 144 173 1097985 1097956 Mantoniella tinhauana isolate LFS chromosome 5 blastn 90 56.5 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;