RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB65329" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJEB65329 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3956129 3956129 PRJEB65329_S_NODE_14444_length_173_cov_2.381944_g14282_i0 PRJEB65329 14444 173 2.381944 4.12076312 Chlorella variabilis 554065 Plants Plants 121 3.929999999999999e-23   NTclustered gi|552809829|ref|XM_005842979.1| 554065 g14282 i0 93.75 1.29479768786127 80 5 46 0 75 154 305 226 Chlorella variabilis hypothetical protein (CHLNCDRAFT_55429) mRNA, complete cds blastn 224 121 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
10333298 10333298 PRJEB65329_S_NODE_8009_length_254_cov_9.217778_g7847_i0 PRJEB65329 8009 254 9.217778 23.41315612 Monoraphidium neglectum 145388 Plants Plants 220 5.97e-53   NTclustered gi|926773395|ref|XM_014039718.1| 145388 g7847 i0 88.108 65.6417322834646 185 22 73 0 3 187 362 546 Monoraphidium neglectum ADP-ribosylation factor 1 mRNA blastn 16673 220 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
17571778 17571778 PRJEB65329_S_NODE_15754_length_164_cov_3.029630_g15592_i0 PRJEB65329 15754 164 3.02963 4.9685932 Eukaryota 2759 Plants Plants 60.2 8.18e-5   NTclustered gi|824555904|dbj|AB971117.1| 3055 g15592 i0 100 4.26829268292683 32 0 20 0 107 138 3382 3351 Chlamydomonas reinhardtii TAR1 gene for TAG accumulation regulator 1 protein, complete sequence, strain: C9 blastn 700 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;