RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB65099" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB65099 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2680059 2680059 PRJEB65099_P_NODE_5783_length_248_cov_0.891429_g5678_i0 PRJEB65099 5783 248 0.891429 2.21074392 Desulfoglaeba alkanexedens 361111 Bacteria Bacteria 226 1.2499999999999999e-54   NTclustered gi|1649181537|gb|CP040098.1| 980445 g5678 i0 84.188 2.84677419354839 234 35 94 2 1 233 1287467 1287235 Desulfoglaeba alkanexedens ALDC chromosome, complete genome blastn 706 226 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Desulfoglaeba Desulfoglaeba alkanexedens
7782325 7782325 PRJEB65099_P_NODE_5407_length_250_cov_0.881356_g5302_i0 PRJEB65099 5407 250 0.881356 2.20339 Trichlorobacter lovleyi 313985 Bacteria Bacteria 412 9.02e-111   NTclustered gi|189419341|gb|CP001089.1| 398767 g5302 i0 96.414 2.008 251 8 100 1 1 250 1813410 1813660 Geobacter lovleyi SZ, complete genome blastn 502 412 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Trichlorobacter Trichlorobacter lovleyi
24355783 24355783 PRJEB65099_P_NODE_6560_length_244_cov_0.912281_g6455_i0 PRJEB65099 6560 244 0.912281 2.22596564 Desulfocurvibacter africanus 873 Bacteria Bacteria 268 2.01e-67   NTclustered gi|367460290|gb|CP003221.1| 690850 g6455 i0 86.585 99.8811475409836 246 29 100 4 1 244 112126 111883 Desulfocurvibacter africanus subsp. africanus str. Walvis Bay chromosome, complete genome blastn 24371 268 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfocurvibacter Desulfocurvibacter africanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;