RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB65099" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB65099 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
129938 129938 PRJEB65099_P_NODE_5641_length_249_cov_0.886364_g5536_i0 PRJEB65099 5641 249 0.886364 2.20704636 Meloidogyne incognita 6306 Nematoda Nematoda 449 6.840000000000001e-122   NTclustered gi|133752979|gb|EF370396.1| 6306 g5536 i0 99.197 5.45381526104418 249 2 100 0 1 249 1075 1323 Meloidogyne incognita venom allergen-like protein (vap-2) gene, complete cds blastn 1358 449 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne incognita
16706635 16706635 PRJEB65099_P_NODE_6514_length_244_cov_0.912281_g6409_i0 PRJEB65099 6514 244 0.912281 2.22596564 Meloidogyne incognita 6306 Nematoda Nematoda 446 8.639999999999999e-121   NTclustered gi|40037069|gb|AY422836.1| 6306 g6409 i0 99.59 5.0655737704918 244 1 100 0 1 244 1064 1307 Meloidogyne incognita cellulase (eng3) mRNA, complete cds blastn 1236 446 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne incognita

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;