RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB65099" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJEB65099 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
129928 129928 PRJEB65099_P_NODE_4661_length_259_cov_1.494624_g4556_i0 PRJEB65099 4661 259 1.494624 3.87107616 uncultured Trebouxiophyceae 167235 Plants Plants 340 4.5e-89   NTclustered gi|1735341976|gb|MN419176.1| 167235 g4556 i0 95.735 91.1621621621622 211 9 81 0 1 211 382 592 Uncultured Trebouxiophyceae clone EukCL14 large subunit ribosomal RNA gene, partial sequence blastn 23611 340 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Trebouxiophyceae
11608467 11608467 PRJEB65099_P_NODE_4930_length_253_cov_0.866667_g4825_i0 PRJEB65099 4930 253 0.866667 2.19266751 Symbiochloris symbiontica 531392 Plants Plants 416 7.069999999999999e-112   NTclustered gi|922575251|gb|JQ921011.1| 531392 g4825 i0 96.429 94.5059288537549 252 9 99 0 2 253 1639 1388 Dictyochloropsis symbiontica strain SAG 27.81 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 23910 416 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Symbiochloris Symbiochloris symbiontica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;