RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB65099" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJEB65099 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9057209 9057209 PRJEB65099_P_NODE_5008_length_253_cov_0.866667_g4903_i0 PRJEB65099 5008 253 0.866667 2.19266751 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 346 9.4e-91   NTclustered gi|820695469|tpe|LN714488.1| 572307 g4903 i0 91.304 34.0237154150198 253 22 100 0 1 253 116250 116502 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 8608 346 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
16706605 16706605 PRJEB65099_P_NODE_3514_length_297_cov_3.294643_g3409_i0 PRJEB65099 3514 297 3.294643 9.78508971 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 538 1.74e-148   NTclustered gi|325194239|emb|FR825095.1| 890382 g3409 i0 99.327 100.010101010101 297 2 100 0 1 297 1467 1171 Albugo laibachii Nc14, genomic contig CONTIG_1625_NC14_v4_1818_619 blastn 29703 538 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
21806706 21806706 PRJEB65099_P_NODE_758_length_734_cov_3.260212_g663_i0 PRJEB65099 758 734 3.260212 23.92995608 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.02   NTclustered gi|170285697|emb|CU672270.3| 123356 g663 i0 100 0.0395095367847411 29 0 4 0 446 474 1789 1761 H.parasitica DNA sequence from clone HpEmoy2-20J10, complete sequence blastn 29 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;