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contig_metadata

35 rows where analysis = "blastn", bioproject = "PRJEB65099" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 35 ✖

bioproject 1

  • PRJEB65099 · 35 ✖

analysis 1

  • blastn · 35 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
993909 993909 PRJEB65099_P_NODE_3001_length_330_cov_1.303502_g2896_i0 PRJEB65099 3001 330 1.303502 4.3015566 Rosales 3744 Plants Plants 604 1.8999999999999996e-168   NTclustered gi|1228285570|gb|KY931664.1| 3477 g2896 i0 99.697 199 330 1 100 0 1 330 108029 108358 Parasponia rigida isolate PriWU20x00 chloroplast blastn 65670 604 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Parasponia Parasponia rigida
993925 993925 PRJEB65099_P_NODE_7141_length_203_cov_4.038462_g7036_i0 PRJEB65099 7141 203 4.038462 8.19807786 Solanum 4107 Plants Plants 375 9.24e-100   NTclustered gi|1996569907|dbj|LC613098.1| 4081 g7036 i0 100 201 203 0 100 0 1 203 59221 59423 Solanum lycopersicum O chloroplast DNA, contig: OCp001, partial sequence blastn 40803 375 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
2269068 2269068 PRJEB65099_P_NODE_3442_length_301_cov_6.188596_g3337_i0 PRJEB65099 3442 301 6.188596 18.62767396 Eukaryota 2759 Plants Plants 556 4.87e-154   NTclustered gi|1721134033|emb|LR130855.1| 38872 g3337 i0 100 100.02657807309 301 0 100 0 1 301 3304 3604 Fraxinus americana genomic DNA containing ETS-18S-ITS1-5.8S-ITS2-26S region, specimen voucher R.E. Weaver & J. Nickerson 968-79 (A) blastn 30108 556 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Oleaceae Fraxinus Fraxinus americana
3544395 3544395 PRJEB65099_P_NODE_2883_length_337_cov_4.848485_g2778_i0 PRJEB65099 2883 337 4.848485 16.33939445 Fraxinus 38871 Plants Plants 623 5.369999999999999e-174   NTclustered gi|306032878|gb|HM242771.1| 166594 g2778 i0 100 99.5816023738872 337 0 100 0 1 337 573 237 Fraxinus angustifolia isolate Fangustifolia_Hap_53 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 33559 623 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Oleaceae Fraxinus Fraxinus angustifolia
3544397 3544397 PRJEB65099_P_NODE_2963_length_333_cov_0.915385_g2858_i0 PRJEB65099 2963 333 0.915385 3.04823205 Fagales 3502 Plants Plants 614 3.189999999999999e-171   NTclustered gi|2037096431|gb|MW582695.1| 28930 g2858 i0 100 122.315315315315 332 0 99 0 1 332 265137 265468 Fagus sylvatica isolate FSYLV_37_PL_JAMY mitochondrion, complete genome blastn 40731 614 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Fagus Fagus sylvatica
3544398 3544398 PRJEB65099_P_NODE_3063_length_325_cov_11.761905_g2958_i0 PRJEB65099 3063 325 11.761905 38.22619125 Eukaryota 2759 Plants Plants 590 5.2299999999999986e-164   NTclustered gi|2316525649|ref|XR_007817749.1| 3656 g2958 i0 99.385 100 325 2 100 0 1 325 9 333 PREDICTED: Cucumis melo 18S ribosomal RNA (LOC127146117), rRNA blastn 32500 590 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Cucumis Cucumis melo
3956040 3956040 PRJEB65099_P_NODE_5144_length_252_cov_0.871508_g5039_i0 PRJEB65099 5144 252 0.871508 2.19620016 Capsicum annuum 4072 Plants Plants 132 2.85e-26   NTclustered gi|2217044631|ref|XR_007047930.1| 4072 g5039 i0 78.974 1.91666666666667 195 39 77 2 4 197 423 230 PREDICTED: Capsicum annuum uncharacterized LOC124889238 (LOC124889238), transcript variant X2, ncRNA blastn 483 132 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Capsicum Capsicum annuum
3956048 3956048 PRJEB65099_P_NODE_5744_length_248_cov_0.891429_g5639_i0 PRJEB65099 5744 248 0.891429 2.21074392 Capsicum annuum 4072 Plants Plants 446 8.81e-121   NTclustered gi|1059048066|gb|KU997025.1| 4072 g5639 i0 99.19 8.84274193548387 247 2 99 0 1 247 123882 123636 Capsicum annuum, 6 clones, complete sequence blastn 2193 446 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Capsicum Capsicum annuum
5232485 5232485 PRJEB65099_P_NODE_5945_length_247_cov_0.896552_g5840_i0 PRJEB65099 5945 247 0.896552 2.21448344 Capsicum annuum 4072 Plants Plants 121 6.03e-23   NTclustered gi|2217026970|ref|XR_007043966.1| 4072 g5840 i0 81.935 0.62753036437247 155 17 61 4 93 242 185 333 PREDICTED: Capsicum annuum uncharacterized LOC107870465 (LOC107870465), transcript variant X1, ncRNA blastn 155 121 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Capsicum Capsicum annuum
5232488 5232488 PRJEB65099_P_NODE_6125_length_246_cov_0.901734_g6020_i0 PRJEB65099 6125 246 0.901734 2.21826564 Cucumis melo 3656 Plants Plants 183 7.549999999999997e-42   NTclustered gi|733601796|emb|LN681928.1| 3656 g6020 i0 86.471 4.64227642276423 170 20 68 3 10 177 5552033 5552201 Cucumis melo genomic scaffold, anchoredscaffold00004 blastn 1142 183 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Cucumis Cucumis melo
6097031 6097031 PRJEB65099_P_NODE_1265_length_555_cov_1.809129_g1160_i0 PRJEB65099 1265 555 1.809129 10.04066595 Magnoliopsida 3398 Plants Plants 1009 0   NTclustered gi|2289978102|gb|MZ520998.1| 4072 g1160 i0 99.459 159.661261261261 555 3 100 0 1 555 59555 59001 Capsicum annuum mitochondrion, complete genome blastn 88612 1009 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Capsicum Capsicum annuum
6097037 6097037 PRJEB65099_P_NODE_3945_length_281_cov_3.216346_g3840_i0 PRJEB65099 3945 281 3.216346 9.03793226 Magnoliopsida 3398 Plants Plants 520 5.909999999999999e-143   NTclustered gi|1315147451|gb|MF136506.1| 3516 g3840 i0 100 200 281 0 100 0 1 281 109317 109597 Alnus incana isolate CH-07 chloroplast, complete genome blastn 56200 520 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Betulaceae Alnus Alnus incana
6508183 6508183 PRJEB65099_P_NODE_6646_length_243_cov_0.917647_g6541_i0 PRJEB65099 6646 243 0.917647 2.22988221 Triticum turgidum 4571 Plants Plants 407 4.06e-109   NTclustered gi|1304471578|gb|MF406151.1| 4567 g6541 i0 99.115 8.29218106995885 226 2 93 0 18 243 570 345 Triticum turgidum subsp. durum HDZipI-5B gene, promoter region blastn 2015 407 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum turgidum
6508185 6508185 PRJEB65099_P_NODE_6766_length_242_cov_1.745562_g6661_i0 PRJEB65099 6766 242 1.745562 4.22426004 Triticum aestivum 4565 Plants Plants 235 2.02e-57   NTclustered gi|300681466|emb|FN564430.1| 4565 g6661 i0 92.216 12.1735537190083 167 12 69 1 1 167 926475 926640 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0464b blastn 2946 235 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
7371371 7371371 PRJEB65099_P_NODE_2566_length_361_cov_3.427083_g2461_i0 PRJEB65099 2566 361 3.427083 12.37176963 Solanaceae 4070 Plants Plants 667 0   NTclustered gi|2839189697|ref|XR_011219724.1| 4081 g2461 i0 100 100 361 0 100 0 1 361 1849 1489 PREDICTED: Solanum lycopersicum 28S ribosomal RNA (LOC138347010), rRNA blastn 36100 667 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
8646941 8646941 PRJEB65099_P_NODE_3007_length_329_cov_5.554688_g2902_i0 PRJEB65099 3007 329 5.554688 18.27492352 Oleaceae 4144 Plants Plants 603 6.819999999999999e-168   NTclustered gi|2744374376|gb|PP920091.1| 13597 g2902 i0 99.697 115.048632218845 330 0 100 1 1 329 67303 66974 Ligustrum vulgare mitochondrion, complete genome blastn 37851 603 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Oleaceae Ligustrum Ligustrum vulgare
12472817 12472817 PRJEB65099_P_NODE_1210_length_572_cov_2.346693_g1105_i0 PRJEB65099 1210 572 2.346693 13.42308396 Magnoliopsida 3398 Plants Plants 1024 0   NTclustered gi|66969392|gb|DQ008804.1| 3426 g1105 i0 99.121 113.769230769231 569 5 99 0 1 569 1176 1744 Canella winterana large subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 65076 1029 0.99514091350826 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Canellales Canellaceae Canella Canella winterana
13747290 13747290 PRJEB65099_P_NODE_3111_length_322_cov_1.726908_g3006_i0 PRJEB65099 3111 322 1.726908 5.56064376 Magnoliopsida 3398 Plants Plants 595 1.1099999999999995e-165   NTclustered gi|1495829520|gb|MH559329.1| 4072 g3006 i0 100 200 322 0 100 0 1 322 109605 109284 Capsicum annuum isolate ann3 chloroplast, complete genome blastn 64400 595 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Capsicum Capsicum annuum
14158371 14158371 PRJEB65099_P_NODE_6932_length_242_cov_0.923077_g6827_i0 PRJEB65099 6932 242 0.923077 2.23384634 Arabidopsis thaliana 3702 Plants Plants 448 2.3799999999999995e-121   NTclustered gi|1063680333|ref|NM_100377.4| 3702 g6827 i0 100 16.6694214876033 242 0 100 0 1 242 1087 846 Arabidopsis thaliana triacylglycerol lipase-like protein (AT1G04985), mRNA blastn 4034 448 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana
16706611 16706611 PRJEB65099_P_NODE_4514_length_263_cov_2.105263_g4409_i0 PRJEB65099 4514 263 2.105263 5.53684169 Solanum lycopersicum 4081 Plants Plants 348 2.7300000000000004e-91   NTclustered gi|438122|emb|Z29104.1| 4081 g4409 i0 90.53 46.9011406844106 264 24 100 1 1 263 285 22 L.esculentum mRNA for signal recognition particle 7S RNA (variant G) blastn 12335 348 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
16706616 16706616 PRJEB65099_P_NODE_5174_length_252_cov_0.871508_g5069_i0 PRJEB65099 5174 252 0.871508 2.19620016 Olea europaea 4146 Plants Plants 411 3.269999999999999e-110   NTclustered gi|1279066372|ref|XM_023039364.1| 158386 g5069 i0 96.032 31.531746031746 252 10 100 0 1 252 1518 1267 PREDICTED: Olea europaea var. sylvestris ATP-dependent RNA helicase-like protein DB10 (LOC111409322), transcript variant X1, mRNA blastn 7946 411 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Oleaceae Olea Olea europaea
16706621 16706621 PRJEB65099_P_NODE_5434_length_250_cov_0.881356_g5329_i0 PRJEB65099 5434 250 0.881356 2.20339 Triticum aestivum 4565 Plants Plants 329 9.34e-86   NTclustered gi|299109310|emb|FN564426.1| 4565 g5329 i0 90.476 16.128 252 21 100 3 1 250 1653752 1653502 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0005b blastn 4032 329 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
16706625 16706625 PRJEB65099_P_NODE_5754_length_248_cov_0.891429_g5649_i0 PRJEB65099 5754 248 0.891429 2.21074392 Morus notabilis 981085 Plants Plants 333 7.149999999999999e-87   NTclustered gi|703153451|ref|XM_010112382.1| 981085 g5649 i0 98.413 1.57661290322581 189 3 76 0 1 189 189 1 PREDICTED: Morus notabilis uncharacterized LOC21393032 (LOC21393032), mRNA blastn 391 333 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Moraceae Morus Morus notabilis
16706634 16706634 PRJEB65099_P_NODE_6474_length_244_cov_0.912281_g6369_i0 PRJEB65099 6474 244 0.912281 2.22596564 Olea europaea 4146 Plants Plants 281 2.58e-71   NTclustered gi|1279086050|ref|XM_022988216.1| 158386 g6369 i0 88.75 0.983606557377049 240 14 96 7 9 242 769 537 PREDICTED: Olea europaea var. sylvestris BI1-like protein (LOC111367377), partial mRNA blastn 240 281 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Oleaceae Olea Olea europaea
16706640 16706640 PRJEB65099_P_NODE_7014_length_235_cov_4.759259_g6909_i0 PRJEB65099 7014 235 4.759259 11.18425865 Saussurea qinghaiensis 238952 Plants Plants 303 5.27e-78   NTclustered gi|34419959|gb|AY366350.1| 238952 g6909 i0 95.767 100.63829787234 189 7 100 1 47 235 461 274 Saussurea qinghaiensis internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence blastn 23650 303 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Saussurea Saussurea qinghaiensis
18845514 18845514 PRJEB65099_P_NODE_2795_length_345_cov_1.022059_g2690_i0 PRJEB65099 2795 345 1.022059 3.52610355 Cupressaceae 3367 Plants Plants 627 4.259999999999999e-175   NTclustered gi|2571293252|ref|XR_009360739.1| 3369 g2690 i0 99.42 100 345 2 100 0 1 345 1487 1831 PREDICTED: Cryptomeria japonica 28S ribosomal RNA (LOC131861706), rRNA blastn 34500 627 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Cupressales Cupressaceae Cryptomeria Cryptomeria japonica
18845524 18845524 PRJEB65099_P_NODE_5135_length_252_cov_0.871508_g5030_i0 PRJEB65099 5135 252 0.871508 2.19620016 Quercus 3511 Plants Plants 466 6.89e-127   NTclustered gi|2293130521|ref|XM_050436721.1| 38942 g5030 i0 100 40.5238095238095 252 0 100 0 1 252 2235 1984 PREDICTED: Quercus robur uncharacterized LOC126733413 (LOC126733413), transcript variant X4, mRNA blastn 10212 466 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus robur
21395996 21395996 PRJEB65099_P_NODE_2617_length_358_cov_2.070175_g2512_i0 PRJEB65099 2617 358 2.070175 7.4112265 Magnoliopsida 3398 Plants Plants 651 0   NTclustered gi|910750164|gb|KR336549.1| 4615 g2512 i0 99.441 199 358 2 100 0 1 358 109100 109457 Ananas comosus cultivar MD-2 chloroplast, complete genome blastn 71242 651 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Bromeliaceae Ananas Ananas comosus
21806684 21806684 PRJEB65099_P_NODE_4538_length_263_cov_1.331579_g4433_i0 PRJEB65099 4538 263 1.331579 3.50205277 Morus notabilis 981085 Plants Plants 416 7.389999999999998e-112   NTclustered gi|703103658|ref|XM_010099484.1| 981085 g4433 i0 96.787 0.946768060836502 249 8 95 0 15 263 1 249 PREDICTED: Morus notabilis pectinesterase inhibitor (LOC21387705), mRNA blastn 249 416 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Moraceae Morus Morus notabilis
22670777 22670777 PRJEB65099_P_NODE_2938_length_334_cov_1.877395_g2833_i0 PRJEB65099 2938 334 1.877395 6.2704993 root 1 Root_unresolved Root_unresolved 617 2.48e-172   NTclustered gi|66969308|gb|DQ008720.1| 3472 g2833 i0 100 111.080838323353 334 0 100 0 1 334 527 860 Sanguinaria canadensis small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 37101 617 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ranunculales Papaveraceae Sanguinaria Sanguinaria canadensis
22670788 22670788 PRJEB65099_P_NODE_4878_length_253_cov_1.533333_g4773_i0 PRJEB65099 4878 253 1.533333 3.87933249 Magnoliopsida 3398 Plants Plants 457 4.16e-124   NTclustered gi|2523336931|emb|OX940873.1| 33127 g4773 i0 99.209 126.387351778656 253 2 100 0 1 253 188775 188523 Parietaria judaica genome assembly, organelle: mitochondrion blastn 31976 457 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Urticaceae Parietaria Parietaria judaica
22670799 22670799 PRJEB65099_P_NODE_6878_length_242_cov_0.923077_g6773_i0 PRJEB65099 6878 242 0.923077 2.23384634 Magnoliopsida 3398 Plants Plants 448 2.3799999999999995e-121   NTclustered gi|315131272|emb|AM933080.1| 38873 g6773 i0 100 100.004132231405 242 0 100 0 1 242 38 279 Fraxinus excelsior plastid trnT-trnL intergenic spacer, specimen voucher G. Besnard 01-2007 (G) blastn 24201 448 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Oleaceae Fraxinus Fraxinus excelsior
23081859 23081859 PRJEB65099_P_NODE_3219_length_314_cov_13.099585_g3114_i0 PRJEB65099 3219 314 13.099585 41.1326969 Bupleurum falcatum 46367 Plants Plants 569 6.559999999999998e-158   NTclustered gi|2571153582|gb|OR493979.1| 46367 g3114 i0 99.363 104.808917197452 314 2 100 0 1 314 5706 5393 Bupleurum falcatum voucher 2009100601 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 32910 569 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Apiales Apiaceae Bupleurum Bupleurum falcatum
23081873 23081873 PRJEB65099_P_NODE_5739_length_248_cov_0.891429_g5634_i0 PRJEB65099 5739 248 0.891429 2.21074392 Solanum stenotomum 172797 Plants Plants 237 5.77e-58   NTclustered gi|2276446252|ref|XM_049542748.1| 172797 g5634 i0 96.503 1.13709677419355 143 5 58 0 106 248 1762 1620 PREDICTED: Solanum stenotomum replication protein A 70 kDa DNA-binding subunit B-like (LOC125862630), mRNA blastn 282 237 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum stenotomum
24355764 24355764 PRJEB65099_P_NODE_3720_length_289_cov_1.472222_g3615_i0 PRJEB65099 3720 289 1.472222 4.25472158 Olea europaea 4146 Plants Plants 418 2.29e-112   NTclustered gi|1279055094|ref|XM_023033648.1| 158386 g3615 i0 92.734 2 289 21 100 0 1 289 226 514 PREDICTED: Olea europaea var. sylvestris late embryogenesis abundant protein 76-like (LOC111404925), mRNA blastn 578 418 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Oleaceae Olea Olea europaea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;