RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJEB64798" and tax_phylum = "Tardigrada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Tardigrada · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB64798 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7778930 7778930 PRJEB64798_P_NODE_108127_length_210_cov_12.360248_g106361_i0 PRJEB64798 108127 210 12.360248 25.9565208 Paramacrobiotus metropolitanus 2943436 Tardigrada other_Eukaryota 99 2.33e-16   NTclustered gi|2493474571|ref|XM_055490644.1| 2943436 g106361 i0 88.75 1.85238095238095 80 9 38 0 124 203 664 585 PREDICTED: Paramacrobiotus metropolitanus GTP-binding nuclear protein Ran (LOC129594085), mRNA blastn 389 99 1 Eukaryota Opisthokonta Metazoa Tardigrada Eutardigrada Parachela Macrobiotidae Paramacrobiotus Paramacrobiotus metropolitanus
7780631 7780631 PRJEB64798_P_NODE_223507_length_161_cov_4.258929_g221741_i0 PRJEB64798 223507 161 4.258929 6.85687569 Paramacrobiotus metropolitanus 2943436 Tardigrada other_Eukaryota 217 4.48e-52   NTclustered gi|2493507836|ref|XR_008692101.1| 2943436 g221741 i0 91.667 22.3478260869565 156 13 97 0 1 156 3704 3549 PREDICTED: Paramacrobiotus metropolitanus large subunit ribosomal RNA (LOC129600602), rRNA blastn 3598 217 1 Eukaryota Opisthokonta Metazoa Tardigrada Eutardigrada Parachela Macrobiotidae Paramacrobiotus Paramacrobiotus metropolitanus
11196682 11196682 PRJEB64798_P_NODE_243149_length_154_cov_3.457143_g241383_i0 PRJEB64798 243149 154 3.457143 5.32400022 Parachela 149990 Tardigrada other_Eukaryota 172 9.3e-39   NTclustered gi|1519192605|gb|MH079509.1| 459430 g241383 i0 87.919 84.8441558441558 149 14 96 3 3 150 1074 929 Isohypsibius prosostomus isolate TarCPH14 28S ribosomal RNA gene, partial sequence blastn 13066 172 1 Eukaryota Opisthokonta Metazoa Tardigrada Eutardigrada Parachela Isohypsibiidae Isohypsibius Isohypsibius prosostomus
11196852 11196852 PRJEB64798_P_NODE_43249_length_299_cov_22.668000_g41484_i0 PRJEB64798 43249 299 22.668 67.77732 Parachela 149990 Tardigrada other_Eukaryota 71.3 7.68e-8   NTclustered gi|1045522192|dbj|AP013349.1| 947166 g41484 i0 97.561 1.2943143812709 41 1 14 0 192 232 10757 10717 Ramazzottius varieornatus DNA, Fosmid clone: GRVF-025E17, complete sequence blastn 387 71.3 1 Eukaryota Opisthokonta Metazoa Tardigrada Eutardigrada Parachela Ramazzottiidae Ramazzottius Ramazzottius varieornatus
15021073 15021073 PRJEB64798_P_NODE_210252_length_164_cov_142.434783_g208486_i0 PRJEB64798 210252 164 142.434783 233.59304412 Echiniscidae 86847 Tardigrada other_Eukaryota 99 1.73e-16   NTclustered gi|2806626681|gb|PQ350065.1| 466947 g208486 i0 90.541 44.9268292682927 74 7 45 0 79 152 648 575 Echiniscus blumi voucher Ech.blu-07337 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence blastn 7368 99 1 Eukaryota Opisthokonta Metazoa Tardigrada Heterotardigrada Echiniscoidea Echiniscidae Echiniscus Echiniscus blumi
19254690 19254690 PRJEB64798_P_NODE_51896_length_271_cov_1328.144144_g50131_i0 PRJEB64798 51896 271 1328.144144 3599.27063024 Tardigrada environmental sample 554025 Tardigrada other_Eukaryota 311 3.71e-80   NTclustered gi|76873296|emb|AM088113.1| 554025 g50131 i0 97.79 107.73062730627301 181 3 99 1 90 269 1 181 Uncultured tardigrade partial 18S rRNA gene, specimen voucher JM2004_JH26_nSSU blastn 29195 311 1 Eukaryota Opisthokonta Metazoa Tardigrada         Tardigrada environmental sample
23945910 23945910 PRJEB64798_P_NODE_40919_length_308_cov_22.065637_g39154_i0 PRJEB64798 40919 308 22.065637 67.96216196 Parachela 149990 Tardigrada other_Eukaryota 71.3 7.94e-8   NTclustered gi|1045522192|dbj|AP013349.1| 947166 g39154 i0 97.561 1.25649350649351 41 1 13 0 68 108 10717 10757 Ramazzottius varieornatus DNA, Fosmid clone: GRVF-025E17, complete sequence blastn 387 71.3 1 Eukaryota Opisthokonta Metazoa Tardigrada Eutardigrada Parachela Ramazzottiidae Ramazzottius Ramazzottius varieornatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;