RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB64798" and tax_phylum = "Placozoa"

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tax_superkingdom 1

tax_phylum 1

  • Placozoa · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB64798 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5231975 5231975 PRJEB64798_P_NODE_69245_length_232_cov_122.158470_g67480_i0 PRJEB64798 69245 232 122.15847 283.4076504 Trichoplax sp. H4 287891 Placozoa other_Eukaryota 213 8.99e-51   NTclustered gi|50956856|gb|AY652585.1| 287891 g67480 i0 90.741 69.8275862068966 162 11 70 2 7 168 974 1131 Trichoplax sp. H4 28S ribosomal RNA gene, partial sequence blastn 16200 213 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax sp. H4
7778985 7778985 PRJEB64798_P_NODE_111407_length_210_cov_3.801242_g109641_i0 PRJEB64798 111407 210 3.801242 7.9826082 Trichoplax adhaerens 10228 Placozoa other_Eukaryota 80.5 8.45e-11   NTclustered gi|195998256|ref|XM_002108961.1| 10228 g109641 i0 87.324 0.471428571428571 71 7 33 2 110 178 1528 1458 Trichoplax adhaerens uncharacterized protein (TRIADDRAFT_19465), partial mRNA blastn 99 80.5 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax adhaerens
23945399 23945399 PRJEB64798_P_NODE_175519_length_176_cov_4.637795_g173753_i0 PRJEB64798 175519 176 4.637795 8.1625192 Trichoplax 10227 Placozoa other_Eukaryota 86.1 1.46e-12   NTclustered gi|34495333|gb|AY303975.1| 10228 g173753 i0 96.154 45.8011363636364 52 2 30 0 1 52 2156 2105 Trichoplax adhaerens 28S ribosomal RNA gene, partial sequence blastn 8061 86.1 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax adhaerens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;