RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJEB64798" and tax_phylum = "Perkinsozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 9 ✖

tax_clade 1

bioproject 1

  • PRJEB64798 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
127209 127209 PRJEB64798_P_NODE_15981_length_498_cov_76.904232_g14288_i0 PRJEB64798 15981 498 76.904232 382.98307536 uncultured Perkinsea 373149 SAR_Eukaryotes SAR_Eukaryotes 649 0   NTclustered gi|918566078|gb|KP122543.1| 373149 g14288 i0 95.771 80.6164658634538 402 17 81 0 5 406 122 523 Uncultured Perkinsea clone G2013_T1_A7 18S ribosomal RNA gene, partial sequence blastn 40147 649 1 Eukaryota Sar   Perkinsozoa         uncultured Perkinsea
128202 128202 PRJEB64798_P_NODE_22881_length_413_cov_43.750000_g21139_i0 PRJEB64798 22881 413 43.75 180.6875 Salmoxcellia vastator 2874172 SAR_Eukaryotes SAR_Eukaryotes 78.7 6.55e-10   NTclustered gi|2258116978|gb|ON819178.1| 2874172 g21139 i0 82.759 0.210653753026634 87 15 21 0 195 281 4584 4670 Salmoxcellia vastator strain BC241120 internal transcribed spacer region, partial sequence blastn 87 78.7 1 Eukaryota Sar   Perkinsozoa   Perkinsida Xcellidae Salmoxcellia Salmoxcellia vastator
4821111 4821111 PRJEB64798_P_NODE_191204_length_170_cov_1.809917_g189438_i0 PRJEB64798 191204 170 1.809917 3.0768589 Perkinsus 28000 SAR_Eukaryotes SAR_Eukaryotes 78.7 2.35e-10   NTclustered gi|38885066|gb|AY391259.1| 31276 g189438 i0 81.633 1.93529411764706 98 14 56 4 8 103 567 662 Perkinsus marinus heat shock protein 90 gene, partial cds blastn 329 78.7 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
7371050 7371050 PRJEB64798_P_NODE_47446_length_285_cov_3.699153_g45681_i0 PRJEB64798 47446 285 3.699153 10.54258605 Perkinsus 28000 SAR_Eukaryotes SAR_Eukaryotes 132 3.29e-26   NTclustered gi|22417090|gb|AF509333.1| 32597 g45681 i0 89.423 5.52631578947368 104 11 36 0 177 280 7058 6955 Perkinsus atlanticus 5S ribosomal RNA, small subunit ribosomal RNA genes, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 1575 132 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
20527954 20527954 PRJEB64798_P_NODE_143417_length_191_cov_23.725352_g141651_i0 PRJEB64798 143417 191 23.725352 45.31542232 uncultured Perkinsea 373149 SAR_Eukaryotes SAR_Eukaryotes 204 4.289999999999999e-48   NTclustered gi|918566068|gb|KP122533.1| 373149 g141651 i0 90.323 81.8638743455497 155 15 81 0 32 186 287 133 Uncultured Perkinsea clone BIB6_B2 18S ribosomal RNA gene, partial sequence blastn 15636 204 1 Eukaryota Sar   Perkinsozoa         uncultured Perkinsea
22669827 22669827 PRJEB64798_P_NODE_155818_length_185_cov_7.205882_g154052_i0 PRJEB64798 155818 185 7.205882 13.3308817 Perkinsus 28000 SAR_Eukaryotes SAR_Eukaryotes 100 5.56e-17   NTclustered gi|22417090|gb|AF509333.1| 32597 g154052 i0 77.901 5.39459459459459 181 26 94 12 13 185 5609 5783 Perkinsus atlanticus 5S ribosomal RNA, small subunit ribosomal RNA genes, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 998 100 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
23079397 23079397 PRJEB64798_P_NODE_170919_length_178_cov_5.155039_g169153_i0 PRJEB64798 170919 178 5.155039 9.17596942 Perkinsus olseni 32597 SAR_Eukaryotes SAR_Eukaryotes 106 1.14e-18   NTclustered gi|22417090|gb|AF509333.1| 32597 g169153 i0 78.212 40.5056179775281 179 29 98 10 5 178 5618 5791 Perkinsus atlanticus 5S ribosomal RNA, small subunit ribosomal RNA genes, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 7210 106 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
23946211 23946211 PRJEB64798_P_NODE_89899_length_212_cov_7.024540_g88133_i0 PRJEB64798 89899 212 7.02454 14.8920248 Perkinsus 28000 SAR_Eukaryotes SAR_Eukaryotes 82.4 2.38e-11   NTclustered gi|218526343|gb|EU919449.1| 31276 g88133 i0 94.34 25.0330188679245 53 3 25 0 4 56 932 880 Perkinsus marinus isolate EBPICv15-H6-G5 clone 3 large subunit ribosomal RNA gene, partial sequence blastn 5307 82.4 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
25219511 25219511 PRJEB64798_P_NODE_28260_length_370_cov_86.299065_g26504_i0 PRJEB64798 28260 370 86.299065 319.3065405 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 222 2.53e-53   NTclustered gi|22417090|gb|AF509333.1| 32597 g26504 i0 88.172 49.1243243243243 186 22 50 0 1 186 6902 7087 Perkinsus atlanticus 5S ribosomal RNA, small subunit ribosomal RNA genes, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 18176 222 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;