RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where analysis = "blastn", bioproject = "PRJEB64798" and tax_phylum = "Negarnaviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJEB64798 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19252618 19252618 PRJEB64798_P_NODE_147796_length_189_cov_9.285714_g146030_i0 PRJEB64798 147796 189 9.285714 17.54999946 Orthodiscovirus iberiae 2956244 Viruses Viruses 246 6.929999999999999e-61   NTclustered gi|2500669124|ref|NC_078633.1| 2689127 g146030 i0 90.761 0.973544973544973 184 17 97 0 2 185 426 609 Plasmopara viticola lesion associated mycobunyavirales-like virus 4 isolate DN26394_c0_g2_i2 segment RNA3 NC (QK745_gp1) gene, complete cds blastn 184 246 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Discoviridae Orthodiscovirus Orthodiscovirus iberiae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;