RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB64798" and tax_phylum = "Candidatus Berkelbacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Berkelbacteria · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB64798 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6507000 6507000 PRJEB64798_P_NODE_3606_length_989_cov_25.764894_g79_i38 PRJEB64798 3606 989 25.764894 254.81480166 Candidatus Berkelbacteria bacterium 2053521 Bacteria Bacteria 363 4.08e-95   NTclustered gi|1950822261|gb|CP066697.1| 2053521 g79 i38 79.924 221.721941354904 528 78 51 24 329 834 518776 519297 Candidatus Berkelbacteria bacterium isolate NC_groundwater_1597_Pr3_B-0.1um_51_91 chromosome blastn 219283 363 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Candidatus Berkelbacteria bacterium
15428822 15428822 PRJEB64798_P_NODE_105913_length_211_cov_7.462963_g104147_i0 PRJEB64798 105913 211 7.462963 15.74685193 Berkelbacteria bacterium GW2011_GWE1_39_12 1618337 Bacteria Bacteria 91.6 3.93e-14   NTclustered gi|837351782|gb|CP011213.1| 1618337 g104147 i0 94.828 23.2748815165877 58 3 27 0 112 169 137064 137121 Berkelbacteria bacterium GW2011_GWE1_39_12, complete genome blastn 4911 91.6 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Berkelbacteria bacterium GW2011_GWE1_39_12
19255157 19255157 PRJEB64798_P_NODE_76576_length_220_cov_4.456140_g74810_i0 PRJEB64798 76576 220 4.45614 9.803508 uncultured Candidatus Berkelbacteria bacterium 1664347 Bacteria Bacteria 135 1.88e-27   NTclustered gi|2874253682|emb|OY969116.1| 1664347 g74810 i0 79.894 99.4318181818182 189 34 84 4 31 215 7699 7511 MAG: uncultured Candidatus Berkelbacteria bacterium isolate MFD04408.bin.c.6 genome assembly, chromosome: 1 blastn 21875 135 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         uncultured Candidatus Berkelbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;