RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB6097" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6097 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
125585 125585 PRJEB6097_S_NODE_6501_length_157_cov_8.311475_g6447_i0 PRJEB6097 6501 157 8.311475 13.04901575 Lampetra planeri 7750 Chordata Chordata 67.6 4.63e-7   NTclustered gi|2814976159|emb|OZ078388.2| 7750 g6447 i0 97.436 1.12101910828025 39 1 25 0 119 157 5643537 5643499 Lampetra planeri genome assembly, chromosome: 65 blastn 176 67.6 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
8645381 8645381 PRJEB6097_S_NODE_5907_length_178_cov_1.391608_g5853_i0 PRJEB6097 5907 178 1.391608 2.47706224 Petromyzontidae 7746 Chordata Chordata 60.2 9e-5   NTclustered gi|2815004333|emb|OZ078626.2| 7748 g5853 i0 97.143 1.5561797752809 35 1 20 0 59 93 2122290 2122324 Lampetra fluviatilis genome assembly, chromosome: 58 blastn 277 60.2 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
9052848 9052848 PRJEB6097_S_NODE_6328_length_163_cov_1.562500_g6274_i0 PRJEB6097 6328 163 1.5625 2.546875 Mus musculus 10090 Chordata Chordata 54.7 0.004   NTclustered gi|68448667|gb|AC160561.2| 10090 g6274 i0 100 0.177914110429448 29 0 18 0 135 163 34628 34600 Mus musculus BAC clone RP23-102D22 from chromosome 12, complete sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;