RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB6097" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 5 ✖

bioproject 1

  • PRJEB6097 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2267503 2267503 PRJEB6097_S_NODE_6242_length_165_cov_5.384615_g6188_i0 PRJEB6097 6242 165 5.384615 8.88461475 Magnoliopsida 3398 Plants Plants 272 9.73e-69   NTclustered gi|1878849229|gb|MT796565.1| 3505 g6188 i0 100 89.2424242424242 147 0 89 0 1 147 2691 2837 Betula pendula isolate DM301 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14725 274 0.992700729927007 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Betulaceae Betula Betula pendula
9052826 9052826 PRJEB6097_S_NODE_1428_length_334_cov_13.622074_g1374_i0 PRJEB6097 1428 334 13.622074 45.49772716 Cephalomitrion aterrimum 1527703 Plants Plants 119 3.06e-22   NTclustered gi|671724742|gb|KF851759.1| 1527703 g1374 i0 91.765 25.8473053892216 85 7 25 0 40 124 321 237 Cephalomitrion aterrimum isolate L1226 26S large subunit ribosomal RNA gene, partial sequence blastn 8633 119 1 Eukaryota Embryophyta Viridiplantae Streptophyta Jungermanniopsida Jungermanniales Cephaloziellaceae Cephalomitrion Cephalomitrion aterrimum
10328631 10328631 PRJEB6097_S_NODE_5449_length_208_cov_2.566474_g5395_i0 PRJEB6097 5449 208 2.566474 5.33826592 Mangifera indica 29780 Plants Plants 60.2 1.09e-4   NTclustered gi|2118896846|ref|XM_044613885.1| 29780 g5395 i0 100 0.600961538461538 32 0 15 0 38 69 751 720 PREDICTED: Mangifera indica histone deacetylase HDT1-like (LOC123199064), mRNA blastn 125 60.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Anacardiaceae Mangifera Mangifera indica
15020111 15020111 PRJEB6097_S_NODE_5392_length_214_cov_5.368715_g5338_i0 PRJEB6097 5392 214 5.368715 11.4890501 Betulaceae 3514 Plants Plants 396 7.559999999999996e-106   NTclustered gi|1878849229|gb|MT796565.1| 3505 g5338 i0 100 100 214 0 100 0 1 214 2696 2483 Betula pendula isolate DM301 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21400 396 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Betulaceae Betula Betula pendula
19251136 19251136 PRJEB6097_S_NODE_6816_length_150_cov_1.043478_g6762_i0 PRJEB6097 6816 150 1.043478 1.565217 Epilobium hirsutum 210355 Plants Plants 278 1.85e-70   NTclustered gi|2917847041|emb|OZ228920.1| 210355 g6762 i0 100 116 150 0 100 0 1 150 121976 122125 Epilobium hirsutum genome assembly, organelle: mitochondrion blastn 17400 278 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Myrtales Onagraceae Epilobium Epilobium hirsutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;