RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB6055" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJEB6055 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
992286 992286 PRJEB6055_S_NODE_5761_length_152_cov_1.367521_g5737_i0 PRJEB6055 5761 152 1.367521 2.07863192 Truepera 332248 Bacteria Bacteria 169 1.18e-37   NTclustered gi|470486385|ref|NR_076754.1| 332249 g5737 i0 86.928 7.05921052631579 153 16 99 3 1 151 1473 1623 Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence blastn 1073 169 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
7369765 7369765 PRJEB6055_S_NODE_906_length_284_cov_11.514056_g882_i0 PRJEB6055 906 284 11.514056 32.69991904 Truepera 332248 Bacteria Bacteria 320 6.51e-83   NTclustered gi|2573973991|gb|CP133611.1| 332249 g882 i0 91.102 526.704225352113 236 21 83 0 15 250 762013 762248 Truepera radiovictrix strain CIP 108686 chromosome, complete genome blastn 149584 320 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
23077571 23077571 PRJEB6055_S_NODE_819_length_293_cov_13967.922481_g795_i0 PRJEB6055 819 293 13967.922481 40926.01286933 Trueperaceae bacterium 2026798 Bacteria Bacteria 259 1.49e-64   NTclustered gi|2621701816|emb|OY759346.1| 2026798 g795 i0 88.235 74.3071672354949 221 20 75 6 74 293 3600935 3600720 MAG: Trueperaceae bacterium isolate dd143a13-9bf8-4812-ba0e-a3cf349d91ff genome assembly, chromosome: 1 blastn 21772 259 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;