RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB6054" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB6054 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25887556 25887556 PRJEB6054_S_NODE_10731_length_172_cov_3.934307_g10642_i0 PRJEB6054 10731 172 3.934307 6.76700804 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 272 1.02e-68   NTclustered gi|50261276|ref|NC_005984.1| 4770 g10642 i0 96.933 151.988372093023 163 4 95 1 1 163 9452 9613 Saprolegnia ferax mitochondrion, complete genome blastn 26142 272 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax
26295822 26295822 PRJEB6054_S_NODE_2630_length_278_cov_7.432099_g2541_i0 PRJEB6054 2630 278 7.432099 20.66123522 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 512 9.77e-141   NTclustered gi|338798188|gb|HQ665249.1| 82940 g2541 i0 100 99.4280575539568 277 0 99 0 1 277 45 321 Pythium middletonii isolate CBS 528.74 28S large subunit ribosomal RNA gene, partial sequence blastn 27641 512 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium middletonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;