RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB6054" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB6054 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25794903 25794903 PRJEB6054_S_NODE_12755_length_162_cov_2.307087_g12666_i0 PRJEB6054 12755 162 2.307087 3.73748094 Heterostelium album PN5 2086695 Evosea other_Eukaryota 150 4.65e-32   NTclustered gi|1160558366|ref|XM_020576016.1| 670386 g12666 i0 91.667 62.6111111111111 108 9 67 0 55 162 1131 1024 Polysphondylium pallidum PN500 actin domain-containing protein (fia), partial mRNA blastn 10143 150 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
26067389 26067389 PRJEB6054_S_NODE_5685_length_214_cov_71077.178771_g5596_i0 PRJEB6054 5685 214 71077.178771 152105.16256994 Physarum polycephalum 5791 Evosea other_Eukaryota 106 1.43e-18   NTclustered gi|16024892|gb|AY050559.1| 5791 g5596 i0 89.412 22.5514018691589 85 7 39 2 131 214 492 409 Physarum polycephalum Skp1 (Skp1) mRNA, complete cds blastn 4826 106 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
26203708 26203708 PRJEB6054_S_NODE_5734_length_214_cov_1.743017_g5645_i0 PRJEB6054 5734 214 1.743017 3.73005638 Protostelium mycophagum 472931 Evosea other_Eukaryota 87.9 5.17e-13   NTclustered gi|262262904|gb|FJ766447.1| 472931 g5645 i0 81.731 29.6214953271028 104 19 49 0 8 111 1195 1298 Protostelium mycophagum strain HI06-7A-1 small subunit ribosomal RNA gene, partial sequence blastn 6339 87.9 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
26475552 26475552 PRJEB6054_S_NODE_12608_length_163_cov_1.242188_g12519_i0 PRJEB6054 12608 163 1.242188 2.02476644 Entamoeba invadens IP1 370355 Evosea other_Eukaryota 71.3 3.75e-8   NTclustered gi|471185808|ref|XM_004182683.1| 370355 g12519 i0 95.556 0.276073619631902 45 1 27 1 94 137 395 351 Entamoeba invadens IP1 60S ribosomal protein L27A-3, putative (EIN_373300) mRNA, complete cds blastn 45 71.3 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;