RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB6054" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJEB6054 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25794912 25794912 PRJEB6054_S_NODE_1307_length_348_cov_40447.150160_g1218_i0 PRJEB6054 1307 348 40447.15016 140756.08255679999 Deinococcus irradiatisoli 2202254 Bacteria Bacteria 388 2.21e-103   NTclustered gi|1392964945|gb|CP029494.1| 2202254 g1218 i0 90.972 170.080459770115 288 26 84 0 61 348 397584 397297 Deinococcus irradiatisoli strain 17bor-2 chromosome, complete genome blastn 59188 388 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus irradiatisoli
25931154 25931154 PRJEB6054_S_NODE_1380_length_342_cov_34.654723_g1291_i0 PRJEB6054 1380 342 34.654723 118.51915266 Deinococcus peraridilitoris DSM 19664 937777 Bacteria Bacteria 252 2.97e-62   NTclustered gi|429128598|gb|CP003382.1| 937777 g1291 i0 82.109 347.599415204678 313 39 88 13 14 314 1140270 1140577 Deinococcus peraridilitoris DSM 19664, complete genome blastn 118879 252 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus peraridilitoris
26023965 26023965 PRJEB6054_S_NODE_9852_length_178_cov_2.258741_g9763_i0 PRJEB6054 9852 178 2.258741 4.02055898 Bacteria 2 Bacteria Bacteria 329 6.21e-86   NTclustered gi|2866351997|gb|PQ721879.1| 47478 g9763 i0 100 99.0449438202247 178 0 100 0 1 178 576 753 Deinococcus sp. strain L174 16S ribosomal RNA gene, partial sequence blastn 17630 329 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
26431726 26431726 PRJEB6054_S_NODE_1207_length_356_cov_40012.822430_g1119_i0 PRJEB6054 1207 356 40012.82243 142445.64785079999 Deinococcus 1298 Bacteria Bacteria 315 3.89e-81   NTclustered gi|470478007|ref|NR_076423.1| 68909 g1119 i0 88.803 172.893258426966 259 26 72 3 75 331 1841 1584 Deinococcus geothermalis plasmid pDGEO01 strain AG-3a 23S ribosomal RNA gene, complete sequence blastn 61550 315 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;