RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB6054" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJEB6054 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26203516 26203516 PRJEB6054_S_NODE_15094_length_153_cov_3.042373_g15005_i0 PRJEB6054 15094 153 3.042373 4.65483069 Roseimaritima ulvae 980254 Bacteria Bacteria 174 2.56e-39   NTclustered gi|1727550343|gb|CP042914.1| 980254 g15005 i0 91.406 6.90196078431373 128 10 84 1 24 151 6157558 6157432 Roseimaritima ulvae strain UC8 chromosome, complete genome blastn 1056 174 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Roseimaritima Roseimaritima ulvae
26203657 26203657 PRJEB6054_S_NODE_4158_length_235_cov_6.680000_g4069_i0 PRJEB6054 4158 235 6.68 15.698 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 390 3.93e-104   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g4069 i0 96.983 30.9404255319149 232 7 99 0 1 232 3557830 3558061 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 7271 390 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
26203702 26203702 PRJEB6054_S_NODE_5654_length_215_cov_6.016667_g5565_i0 PRJEB6054 5654 215 6.016667 12.93583405 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 248 2.25e-61   NTclustered gi|2874253690|emb|OY969416.1| 412056 g5565 i0 88.208 22.0604651162791 212 20 98 3 1 211 1315129 1314922 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 4743 248 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;