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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJEB6054" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 14 ✖

bioproject 1

  • PRJEB6054 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25523205 25523205 PRJEB6054_S_NODE_57_length_796_cov_452.553219_g53_i0 PRJEB6054 57 796 452.553219 3602.32362324 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 837 0   NTclustered gi|221185864|gb|FJ577811.1| 590481 g53 i0 88.794 28.9309045226131 705 49 85 21 119 796 1011 310 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 23029 837 1 Eukaryota Amoebozoa             uncultured Amoebozoa
25794869 25794869 PRJEB6054_S_NODE_1067_length_370_cov_37475.134328_g979_i0 PRJEB6054 1067 370 37475.134328 138657.9970136 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 329 1.45e-85   NTclustered gi|292559443|ref|NC_013986.1| 5778 g979 i0 87.285 13.2162162162162 291 33 78 4 4 292 26736 27024 Hartmannella vermiformis mitochondrion, complete genome blastn 4890 329 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25794903 25794903 PRJEB6054_S_NODE_12755_length_162_cov_2.307087_g12666_i0 PRJEB6054 12755 162 2.307087 3.73748094 Heterostelium album PN5 2086695 Evosea other_Eukaryota 150 4.65e-32   NTclustered gi|1160558366|ref|XM_020576016.1| 670386 g12666 i0 91.667 62.6111111111111 108 9 67 0 55 162 1131 1024 Polysphondylium pallidum PN500 actin domain-containing protein (fia), partial mRNA blastn 10143 150 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
25794993 25794993 PRJEB6054_S_NODE_2275_length_292_cov_49088.509728_g2186_i0 PRJEB6054 2275 292 49088.509728 143338.44840576 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 388 1.82e-103   NTclustered gi|330902855|gb|JF298253.1| 1017091 g2186 i0 97.778 36.9075342465753 225 5 77 0 1 225 1514 1738 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 10777 388 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
25795070 25795070 PRJEB6054_S_NODE_3883_length_241_cov_6.043689_g3794_i0 PRJEB6054 3883 241 6.043689 14.56529049 Ripella platypodia 2047821 Discosea other_Eukaryota 189 1.58e-43   NTclustered gi|1269228362|gb|MF683487.1| 2047821 g3794 i0 84.08 78.3526970954357 201 26 82 6 43 239 1361 1163 Ripella platypodia clone 23.4.38 18S ribosomal RNA gene, partial sequence blastn 18883 189 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
25931480 25931480 PRJEB6054_S_NODE_9988_length_177_cov_2.739437_g9899_i0 PRJEB6054 9988 177 2.739437 4.84880349 Cochliopodium minus 313997 Discosea other_Eukaryota 270 3.7899999999999986e-68   NTclustered gi|330902862|gb|JF298257.1| 313997 g9899 i0 96.364 10.5875706214689 165 4 93 2 14 177 202 39 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 1874 270 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
26023860 26023860 PRJEB6054_S_NODE_1468_length_336_cov_15.265781_g1379_i0 PRJEB6054 1468 336 15.265781 51.29302416 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 599 9.029999999999998e-167   NTclustered gi|441475833|emb|FN562425.4| 688089 g1379 i0 98.806 13.327380952381 335 4 99 0 2 336 532 198 Amoebozoa sp. SZA36 18S rRNA gene, isolate SZA36 blastn 4478 603 0.993366500829187 Eukaryota Amoebozoa             Amoebozoa sp. SZA36
26023923 26023923 PRJEB6054_S_NODE_5004_length_224_cov_4.507937_g4915_i0 PRJEB6054 5004 224 4.507937 10.09777888 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 399 6.169999999999998e-107   NTclustered gi|300078496|gb|GU001158.1| 5778 g4915 i0 99.099 28.65625 222 2 99 0 3 224 996 1217 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6419 399 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
26067188 26067188 PRJEB6054_S_NODE_13_length_1025_cov_29.479798_g12_i0 PRJEB6054 13 1025 29.479798 302.1679295 Ripella sp. 8 1973050 Discosea other_Eukaryota 1531 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g12 i0 94.379 99.4653658536585 1014 29 99 12 3 1015 987 1 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 101952 1531 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
26067389 26067389 PRJEB6054_S_NODE_5685_length_214_cov_71077.178771_g5596_i0 PRJEB6054 5685 214 71077.178771 152105.16256994 Physarum polycephalum 5791 Evosea other_Eukaryota 106 1.43e-18   NTclustered gi|16024892|gb|AY050559.1| 5791 g5596 i0 89.412 22.5514018691589 85 7 39 2 131 214 492 409 Physarum polycephalum Skp1 (Skp1) mRNA, complete cds blastn 4826 106 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
26203708 26203708 PRJEB6054_S_NODE_5734_length_214_cov_1.743017_g5645_i0 PRJEB6054 5734 214 1.743017 3.73005638 Protostelium mycophagum 472931 Evosea other_Eukaryota 87.9 5.17e-13   NTclustered gi|262262904|gb|FJ766447.1| 472931 g5645 i0 81.731 29.6214953271028 104 19 49 0 8 111 1195 1298 Protostelium mycophagum strain HI06-7A-1 small subunit ribosomal RNA gene, partial sequence blastn 6339 87.9 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
26339309 26339309 PRJEB6054_S_NODE_15623_length_151_cov_3.094828_g15534_i0 PRJEB6054 15623 151 3.094828 4.67319028 Stenamoeba limacina 746894 Discosea other_Eukaryota 241 2.4500000000000008e-59   NTclustered gi|292399455|gb|GU810183.1| 746894 g15534 i0 95.364 91.4966887417219 151 7 100 0 1 151 2082 2232 Stenamoeba limacina strain 4692L small subunit ribosomal RNA gene, partial sequence blastn 13816 241 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Stenamoeba Stenamoeba limacina
26475552 26475552 PRJEB6054_S_NODE_12608_length_163_cov_1.242188_g12519_i0 PRJEB6054 12608 163 1.242188 2.02476644 Entamoeba invadens IP1 370355 Evosea other_Eukaryota 71.3 3.75e-8   NTclustered gi|471185808|ref|XM_004182683.1| 370355 g12519 i0 95.556 0.276073619631902 45 1 27 1 94 137 395 351 Entamoeba invadens IP1 60S ribosomal protein L27A-3, putative (EIN_373300) mRNA, complete cds blastn 45 71.3 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens
26475841 26475841 PRJEB6054_S_NODE_7248_length_196_cov_2.360248_g7159_i0 PRJEB6054 7248 196 2.360248 4.62608608 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 198 2.06e-46   NTclustered gi|511487963|gb|JX898537.1| 1260765 g7159 i0 85.204 11.7040816326531 196 26 100 3 1 196 301 109 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 2294 198 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;