RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB58983" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB58983 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3951100 3951100 PRJEB58983_P_NODE_29464_length_249_cov_0.886364_g29049_i0 PRJEB58983 29464 249 0.886364 2.20704636 uncultured archaeon 115547 Archaea Archaea 355 1.53e-93   NTclustered gi|765560247|gb|KP308748.1| 115547 g29049 i0 93.361 81.4939759036145 241 15 97 1 2 242 22442 22203 Uncultured archaeon clone gwc1_scaffold_6647 genomic sequence blastn 20292 355 1 Archaea               uncultured archaeon
5227656 5227656 PRJEB58983_P_NODE_33905_length_232_cov_3.012579_g33490_i0 PRJEB58983 33905 232 3.012579 6.98918328 methanogenic archaeon mixed culture ISO4-G1 1452364 Archaea Archaea 147 9.25e-31   NTclustered gi|998155847|gb|CP013703.1| 1452364 g33490 i0 84.828 64.3146551724138 145 22 63 0 16 160 562449 562305 Methanogenic archaeon mixed culture ISO4-G1 chromosome, complete genome blastn 14921 147 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales     methanogenic archaeon mixed culture ISO4-G1
7777629 7777629 PRJEB58983_P_NODE_4967_length_549_cov_4.682773_g4555_i0 PRJEB58983 4967 549 4.682773 25.70842377 Acidianus brierleyi 41673 Archaea Archaea 63.9 2.5e-5   NTclustered gi|942626|gb|U32317.1|ABU32317 41673 g4555 i0 82.667 0.30054644808743203 75 9 13 4 337 409 693 765 Acidianus brierleyi 23S rRNA gene, partial sequence blastn 165 63.9 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Acidianus Acidianus brierleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;