RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB58983" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB58983 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3542629 3542629 PRJEB58983_P_NODE_19183_length_295_cov_1.387387_g18768_i0 PRJEB58983 19183 295 1.387387 4.09279165 Turneriella 338321 Bacteria Bacteria 505 1.75e-138   NTclustered gi|470489162|ref|NR_076910.1| 29510 g18768 i0 97.324 219.508474576271 299 4 100 2 1 295 1029 1327 Turneriella parva strain DSM 21527 23S ribosomal RNA gene, complete sequence blastn 64755 505 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Turneriella Turneriella parva
10327880 10327880 PRJEB58983_P_NODE_21409_length_282_cov_2.086124_g20994_i0 PRJEB58983 21409 282 2.086124 5.88286968 Spirochaetia bacterium 2053615 Bacteria Bacteria 193 1.47e-44   NTclustered gi|2626255577|emb|OY843750.1| 2053615 g20994 i0 79.004 5.47517730496454 281 59 99 0 1 281 1357364 1357644 MAG: Spirochaetia bacterium isolate 7728ca74-1c7a-4d85-adbe-0c26628de7b6 genome assembly, chromosome: 1 blastn 1544 193 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
10327937 10327937 PRJEB58983_P_NODE_24369_length_268_cov_1.441026_g23954_i0 PRJEB58983 24369 268 1.441026 3.86194968 Leptospira sp. severe_002 2838237 Bacteria Bacteria 496 9.429999999999999e-136   NTclustered gi|2120242214|gb|CP075692.1| 2838237 g23954 i0 100 102.261194029851 268 0 100 0 1 268 257300 257567 Leptospira sp. severe_002 chromosome 1 blastn 27406 496 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira sp. severe_002

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;