RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB58983" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB58983 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9052343 9052343 PRJEB58983_P_NODE_34628_length_227_cov_3.564935_g34213_i0 PRJEB58983 34628 227 3.564935 8.09240245 Philodina roseola 96448 Rotifera other_Eukaryota 420 4.81e-113   NTclustered gi|37785582|gb|AY210469.1| 96448 g34213 i0 100 62.3171806167401 227 0 100 0 1 227 1815 1589 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 14146 420 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
11603244 11603244 PRJEB58983_P_NODE_19750_length_291_cov_2.353211_g19335_i0 PRJEB58983 19750 291 2.353211 6.84784401 Encentrum astridae 360661 Rotifera other_Eukaryota 455 1.7600000000000003e-123   NTclustered gi|124388846|gb|EF151006.1| 360661 g19335 i0 94.845 101.085910652921 291 15 100 0 1 291 2041 1751 Encentrum astridae 28S ribosomal RNA gene, partial sequence blastn 29416 455 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Dicranophoridae Encentrum Encentrum astridae
12878566 12878566 PRJEB58983_P_NODE_26451_length_258_cov_5.075676_g26036_i0 PRJEB58983 26451 258 5.075676 13.09524408 Philodina megalotrocha 1234259 Rotifera other_Eukaryota 477 3.2699999999999985e-130   NTclustered gi|2537903919|gb|JX494737.2| 1234259 g26036 i0 100 99.9922480620155 258 0 100 0 1 258 673 930 Philodina megalotrocha isolate A754 18S ribosomal RNA gene, partial sequence blastn 25798 477 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina megalotrocha

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;