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contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJEB58983" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 18 ✖

tax_clade 1

bioproject 1

  • PRJEB58983 · 18 ✖

analysis 1

  • blastn · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
124676 124676 PRJEB58983_P_NODE_14561_length_334_cov_1.379310_g14146_i0 PRJEB58983 14561 334 1.37931 4.6068954 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 222 2.27e-53   NTclustered gi|2794879146|ref|XM_067888617.1| 164328 g14146 i0 79.936 48.2964071856287 314 53 93 8 23 331 531 223 Phytophthora ramorum Guanine nucleotide-binding protein subunit beta-like protein (KRP23_392), partial mRNA blastn 16131 222 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
124785 124785 PRJEB58983_P_NODE_20521_length_287_cov_1.602804_g20106_i0 PRJEB58983 20521 287 1.602804 4.60004748 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 215 3.2e-51   NTclustered gi|2795021165|ref|XM_067935669.1| 4785 g20106 i0 82.4 80.8606271777004 250 40 86 3 1 248 1089 1336 Phytophthora cinnamomi ATP synthase subunit beta, mitochondrial (IUM83_11126), partial mRNA blastn 23207 215 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
125220 125220 PRJEB58983_P_NODE_8721_length_421_cov_2.635057_g8307_i0 PRJEB58983 8721 421 2.635057 11.09358997 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 761 0   NTclustered gi|698793876|ref|XR_717098.1| 112090 g8307 i0 99.287 101.232779097387 421 3 100 0 1 421 2109 2529 Aphanomyces astaci 28S ribosomal RNA rRNA blastn 42619 761 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
2267340 2267340 PRJEB58983_P_NODE_19082_length_295_cov_3.666667_g18667_i0 PRJEB58983 19082 295 3.666667 10.81666765 Verrucalvaceae 120409 SAR_Eukaryotes SAR_Eukaryotes 540 4.79e-149   NTclustered gi|319769384|gb|HQ343196.1| 112092 g18667 i0 99.661 99.664406779661 295 1 100 0 1 295 917 623 Aphanomyces laevis strain CBS 127282 18S ribosomal RNA gene, partial sequence blastn 29401 545 0.990825688073395 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces laevis
2674873 2674873 PRJEB58983_P_NODE_19843_length_291_cov_1.073394_g19428_i0 PRJEB58983 19843 291 1.073394 3.12357654 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 460 3.78e-125   NTclustered gi|166042839|emb|CU353349.1| 100861 g19428 i0 95.189 13.2749140893471 291 14 100 0 1 291 747 457 Aphanomyces euteiches cDNA blastn 3863 460 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
3950876 3950876 PRJEB58983_P_NODE_19204_length_295_cov_1.000000_g18789_i0 PRJEB58983 19204 295 1 2.95 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 224 5.48e-54   NTclustered gi|675169410|ref|XM_008895342.1| 761204 g18789 i0 81.852 54.7898305084746 270 46 91 2 29 295 303 572 Phytophthora parasitica INRA-310 adenosylhomocysteinase mRNA blastn 16163 224 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
3951197 3951197 PRJEB58983_P_NODE_35404_length_204_cov_9.816794_g34989_i0 PRJEB58983 35404 204 9.816794 20.02625976 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 244 2.7399999999999997e-60   NTclustered gi|813199067|ref|XR_001099866.1| 695850 g34989 i0 88.35 39.4019607843137 206 20 100 4 1 204 1483 1686 Saprolegnia parasitica CBS 223.65 28S ribosomal RNA rRNA blastn 8038 244 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
11603072 11603072 PRJEB58983_P_NODE_11890_length_365_cov_2.386986_g11475_i0 PRJEB58983 11890 365 2.386986 8.7124989 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 239 2.48e-58   NTclustered gi|675211346|ref|XM_008916310.1| 761204 g11475 i0 81.293 24.0219178082192 294 55 81 0 7 300 134 427 Phytophthora parasitica INRA-310 60S ribosomal protein L44 mRNA blastn 8768 239 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
12471127 12471127 PRJEB58983_P_NODE_33430_length_235_cov_3.746914_g33015_i0 PRJEB58983 33430 235 3.746914 8.8052479 root 1 Root_unresolved Root_unresolved 401 1.8199999999999993e-107   NTclustered gi|50261276|ref|NC_005984.1| 4770 g33015 i0 97.447 104.714893617021 235 6 100 0 1 235 7451 7685 Saprolegnia ferax mitochondrion, complete genome blastn 24608 401 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax
12878368 12878368 PRJEB58983_P_NODE_1791_length_953_cov_6.560227_g1458_i0 PRJEB58983 1791 953 6.560227 62.51896331 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 1585 0   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g1458 i0 96.66 106.964323189927 958 25 100 7 1 953 1872 2827 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 101937 1585 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
12878402 12878402 PRJEB58983_P_NODE_19231_length_294_cov_3.389140_g18816_i0 PRJEB58983 19231 294 3.38914 9.9640716 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 488 1.7499999999999996e-133   NTclustered gi|542687346|ref|NC_022178.1| 1202772 g18816 i0 96.622 109.894557823129 296 6 99 2 2 294 6227 5933 Achlya hypogyna mitochondrion, complete genome blastn 32309 488 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
12878892 12878892 PRJEB58983_P_NODE_9551_length_403_cov_9.754545_g9137_i0 PRJEB58983 9551 403 9.754545 39.31081635 Aphanomyces sp. 1982524 SAR_Eukaryotes SAR_Eukaryotes 745 0   NTclustered gi|1578815424|gb|MK546601.1| 1982524 g9137 i0 100 99.985111662531 403 0 100 0 1 403 573 171 Aphanomyces sp. voucher CCIBt4545 large subunit ribosomal RNA gene, partial sequence blastn 40294 745 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces sp.
15427161 15427161 PRJEB58983_P_NODE_17393_length_308_cov_2.629787_g16978_i0 PRJEB58983 17393 308 2.629787 8.09974396 Saprolegnia ferax 4770 SAR_Eukaryotes SAR_Eukaryotes 473 5.179999999999999e-129   NTclustered gi|50261276|ref|NC_005984.1| 4770 g16978 i0 94.481 107.282467532468 308 15 100 2 1 308 10630 10935 Saprolegnia ferax mitochondrion, complete genome blastn 33043 473 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax
17976829 17976829 PRJEB58983_P_NODE_8975_length_415_cov_3.163743_g8561_i0 PRJEB58983 8975 415 3.163743 13.12953345 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 178 6.31e-40   NTclustered gi|542687346|ref|NC_022178.1| 1202772 g8561 i0 79.505 38.0120481927711 283 33 63 13 149 406 8370 8088 Achlya hypogyna mitochondrion, complete genome blastn 15775 178 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
23076913 23076913 PRJEB58983_P_NODE_22699_length_276_cov_1.167488_g22284_i0 PRJEB58983 22699 276 1.167488 3.22226688 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 200 8.56e-47   NTclustered gi|675196130|ref|XM_008908702.1| 761204 g22284 i0 81.667 65.9094202898551 240 44 87 0 3 242 676 437 Phytophthora parasitica INRA-310 hypothetical protein mRNA blastn 18191 200 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
23077051 23077051 PRJEB58983_P_NODE_29899_length_248_cov_0.891429_g29484_i0 PRJEB58983 29899 248 0.891429 2.21074392 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 204 5.849999999999999e-48   NTclustered gi|695460286|ref|XM_009539659.1| 67593 g29484 i0 81.452 72.875 248 46 100 0 1 248 2693 2940 Phytophthora sojae putative ATPase mRNA blastn 18073 204 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
23077118 23077118 PRJEB58983_P_NODE_33019_length_238_cov_2.860606_g32604_i0 PRJEB58983 33019 238 2.860606 6.80824228 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 440 3.899999999999999e-119   NTclustered gi|363498776|gb|JN662487.1| 120398 g32604 i0 100 98.2436974789916 238 0 100 0 1 238 274 37 Aphanomyces stellatus strain GF 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23382 440 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
23077151 23077151 PRJEB58983_P_NODE_35079_length_214_cov_18.326241_g34664_i0 PRJEB58983 35079 214 18.326241 39.21815574 Aphanomyces sp. 1982524 SAR_Eukaryotes SAR_Eukaryotes 396 7.559999999999996e-106   NTclustered gi|1186441155|gb|KY989960.1| 1982524 g34664 i0 100 98.373831775700907 214 0 100 0 1 214 425 212 Aphanomyces sp. isolate CNUaq small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21052 396 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;