RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB58983" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB58983 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1399163 1399163 PRJEB58983_P_NODE_16042_length_320_cov_1.186235_g15627_i0 PRJEB58983 16042 320 1.186235 3.795952 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 183 1.02e-41   NTclustered gi|150982147|gb|EF634662.1| 452809 g15627 i0 87.821 49.153125 156 19 49 0 151 306 165 10 Pristionchus sp. 15 RS5229 large subunit ribosomal protein 27a (rpl-27a) mRNA, partial cds blastn 15729 183 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
2675031 2675031 PRJEB58983_P_NODE_27083_length_256_cov_1.519126_g26668_i0 PRJEB58983 27083 256 1.519126 3.88896256 Diplogastrellus gracilis 669117 Nematoda Nematoda 158 4.79e-34   NTclustered gi|256709130|gb|GQ422217.1| 669117 g26668 i0 82.162 66.2109375 185 31 72 2 73 256 723 540 Diplogastrellus gracilis large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 16950 158 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Diplogastrellus Diplogastrellus gracilis
14153018 14153018 PRJEB58983_P_NODE_10272_length_390_cov_2.779180_g9857_i0 PRJEB58983 10272 390 2.77918 10.838802 Caenorhabditis elegans 6239 Nematoda Nematoda 270 9.45e-68   NTclustered gi|1109667|gb|U31077.1|CEU31077 6239 g9857 i0 80.938 67.748717948718 341 65 87 0 45 385 490 150 Caenorhabditis elegans cyclophilin isoform 3 (cyp-3) mRNA, complete cds blastn 26422 270 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;