RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB58983" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJEB58983 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2674964 2674964 PRJEB58983_P_NODE_24083_length_269_cov_2.096939_g23668_i0 PRJEB58983 24083 269 2.096939 5.64076591 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 357 4.66e-94   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g23668 i0 90.357 44.0371747211896 280 15 100 8 1 269 1622 1900 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 11846 357 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
6503462 6503462 PRJEB58983_P_NODE_8426_length_427_cov_4.734463_g8012_i0 PRJEB58983 8426 427 4.734463 20.21615701 Paravannella minima 1443144 Discosea other_Eukaryota 108 8.66e-19   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g8012 i0 94.286 2.49648711943794 70 4 16 0 43 112 2789 2858 Paravannella minima mitochondrion, complete genome blastn 1066 108 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
16701758 16701758 PRJEB58983_P_NODE_32894_length_239_cov_2.716867_g32479_i0 PRJEB58983 32894 239 2.716867 6.49331213 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 259 1.18e-64   NTclustered gi|659103923|gb|KJ569725.1| 1512276 g32479 i0 92.021 23.4267782426778 188 10 78 4 1 186 695 879 Cochliopodium kieliense clone 9601 18S ribosomal RNA gene, partial sequence blastn 5599 259 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
17976281 17976281 PRJEB58983_P_NODE_13435_length_345_cov_8.525735_g13020_i0 PRJEB58983 13435 345 8.525735 29.41378575 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 233 1.09e-56   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g13020 i0 83.658 0.744927536231884 257 32 74 10 86 339 10317 10566 Thecamoeba quadrilineata mitochondrion, complete genome blastn 257 233 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata
20525661 20525661 PRJEB58983_P_NODE_15457_length_325_cov_2.575397_g15042_i0 PRJEB58983 15457 325 2.575397 8.37004025 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 287 7.69e-73   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g15042 i0 82.875 5.88 327 49 99 5 1 323 10197 9874 Thecamoeba quadrilineata mitochondrion, complete genome blastn 1911 287 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata
23077188 23077188 PRJEB58983_P_NODE_5119_length_542_cov_7.985075_g4707_i0 PRJEB58983 5119 542 7.985075 43.2791065 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 117 1.86e-21   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g4707 i0 82.734 14.5350553505535 139 16 25 4 11 147 9848 9716 Thecamoeba quadrilineata mitochondrion, complete genome blastn 7878 117 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;