RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB58983" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB58983 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7777446 7777446 PRJEB58983_P_NODE_27767_length_253_cov_1.850000_g27352_i0 PRJEB58983 27767 253 1.85 4.6805 Polychytrium aggregatum 110093 Fungi Fungi 165 2.83e-36   NTclustered gi|2432164628|ref|XM_053113621.1| 110093 g27352 i0 80.531 57.6798418972332 226 34 86 8 25 242 1115 1338 Polychytrium aggregatum Adenosylhomocysteinase (BJ171DRAFT_570225), mRNA blastn 14593 165 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
12878750 12878750 PRJEB58983_P_NODE_34831_length_224_cov_4.006623_g34416_i0 PRJEB58983 34831 224 4.006623 8.97483552 Gromochytrium mamkaevae 1486924 Fungi Fungi 78.7 3.28e-10   NTclustered gi|612507318|gb|KF586842.1| 1486924 g34416 i0 97.778 6.14732142857143 45 1 20 0 177 221 6131 6175 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1377 78.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
12878779 12878779 PRJEB58983_P_NODE_4111_length_602_cov_25.750473_g3703_i0 PRJEB58983 4111 602 25.750473 155.01784746 Geranomyces variabilis 109894 Fungi Fungi 257 1.18e-63   NTclustered gi|1866582431|gb|MT730606.1| 109894 g3703 i0 95.625 26.2259136212625 160 7 27 0 342 501 4464 4623 Geranomyces variabilis isolate AF30 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15788 257 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Geranomyces Geranomyces variabilis
15427009 15427009 PRJEB58983_P_NODE_10133_length_392_cov_8.213166_g9718_i0 PRJEB58983 10133 392 8.213166 32.19561072 Gromochytrium mamkaevae 1486924 Fungi Fungi 135 3.62e-27   NTclustered gi|612507318|gb|KF586842.1| 1486924 g9718 i0 84.028 34.0280612244898 144 20 36 3 250 392 5975 5834 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13339 135 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
20118712 20118712 PRJEB58983_P_NODE_6356_length_488_cov_3.862651_g5942_i0 PRJEB58983 6356 488 3.862651 18.84973688 Nowakowskiella 109880 Fungi Fungi 145 7.63e-30   NTclustered gi|194241380|gb|EU828507.1| 546781 g5942 i0 96.591 16.8893442622951 88 2 18 1 401 488 308 222 Nowakowskiella sp. JH FR 28S large subunit ribosomal RNA gene, partial sequence blastn 8242 145 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella sp. JH FR

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;