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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJEB58983" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB58983 · 12 ✖

analysis 1

  • blastn · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2267389 2267389 PRJEB58983_P_NODE_29742_length_248_cov_1.640000_g29327_i0 PRJEB58983 29742 248 1.64 4.0672 Metazoa 33208 Chordata Chordata 52.8 0.022   NTclustered gi|1910335650|ref|XM_016135462.2| 9407 g29327 i0 100 1.24193548387097 28 0 11 0 90 117 3486 3459 PREDICTED: Rousettus aegyptiacus adenylate kinase 9 (AK9), transcript variant X1, mRNA blastn 308 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus
2675139 2675139 PRJEB58983_P_NODE_33603_length_234_cov_3.111801_g33188_i0 PRJEB58983 33603 234 3.111801 7.28161434 Goniurosaurus araneus 449388 Chordata Chordata 52.8 0.021   NTclustered gi|164457670|dbj|AB308468.1| 449388 g33188 i0 100 0.239316239316239 28 0 12 0 14 41 1255 1228 Goniurosaurus araneus mitochondrial ND1, tRNA-Ile, tRNA-Gln, tRNA-Met, ND2, tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys, tRNA-Tyr, COX1 genes, partial and complete cds and sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Eublepharidae Goniurosaurus Goniurosaurus araneus
5227580 5227580 PRJEB58983_P_NODE_29445_length_249_cov_0.886364_g29030_i0 PRJEB58983 29445 249 0.886364 2.20704636 Saccopteryx leptura 249018 Chordata Chordata 54.7 0.006   NTclustered gi|2756211817|ref|XM_066357328.1| 249018 g29030 i0 100 0.116465863453815 29 0 12 0 220 248 1228 1200 PREDICTED: Saccopteryx leptura uncharacterized protein (LOC136386014), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Emballonuridae Saccopteryx Saccopteryx leptura
9052172 9052172 PRJEB58983_P_NODE_25968_length_260_cov_4.139037_g25553_i0 PRJEB58983 25968 260 4.139037 10.7614962 Phalacrocorax carbo 9209 Chordata Chordata 56.5 0.002   NTclustered gi|2716838714|ref|XM_064442533.1| 9209 g25553 i0 100 0.576923076923077 30 0 12 0 165 194 1866 1837 PREDICTED: Phalacrocorax carbo ubiquitin conjugating enzyme E2 W (UBE2W), transcript variant X1, mRNA blastn 150 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Suliformes Phalacrocoracidae Phalacrocorax Phalacrocorax carbo
10328262 10328262 PRJEB58983_P_NODE_7969_length_439_cov_2.101093_g7555_i0 PRJEB58983 7969 439 2.101093 9.22379827 Ornithorhynchus anatinus 9258 Chordata Chordata 62.1 7.05e-5   NTclustered gi|49292283|emb|CR456637.3| 9258 g7555 i0 95 0.507972665148064 40 1 9 1 281 320 87374 87412 Platypus DNA sequence from clone XX-104A18, complete sequence blastn 223 62.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Ornithorhynchidae Ornithorhynchus Ornithorhynchus anatinus
11195459 11195459 PRJEB58983_P_NODE_32049_length_243_cov_0.917647_g31634_i0 PRJEB58983 32049 243 0.917647 2.22988221 root 1 Root_unresolved Root_unresolved 174 4.48e-39   NTclustered gi|54035089|gb|BC084061.1| 8364 g31634 i0 79.918 8.90123456790123 244 43 99 5 1 241 2326 2086 Xenopus tropicalis eukaryotic translation elongation factor 2, mRNA (cDNA clone MGC:79628 IMAGE:6979948), complete cds blastn 2163 174 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
14153521 14153521 PRJEB58983_P_NODE_34832_length_223_cov_19.986667_g34417_i0 PRJEB58983 34832 223 19.986667 44.57026741 Polypterus senegalus 55291 Chordata Chordata 270 5.02e-68   NTclustered gi|1993937637|ref|XM_039741126.1| 55291 g34417 i0 90.385 15.7668161434978 208 17 92 3 1 206 1379 1173 PREDICTED: Polypterus senegalus E3 SUMO-protein ligase ZBED1-like (LOC120518358), transcript variant X2, mRNA blastn 3516 270 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
14153617 14153617 PRJEB58983_P_NODE_7472_length_452_cov_2.918206_g7058_i0 PRJEB58983 7472 452 2.918206 13.19029112 Xenopus laevis 8355 Chordata Chordata 372 2.96e-98   NTclustered gi|157423658|gb|BC153797.1| 8355 g7058 i0 84.533 1.69026548672566 375 58 83 0 12 386 604 978 Xenopus laevis hypothetical protein LOC100126647, mRNA (cDNA clone MGC:181736 IMAGE:8824068), complete cds blastn 764 372 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
15020006 15020006 PRJEB58983_P_NODE_34672_length_227_cov_2.610390_g34257_i0 PRJEB58983 34672 227 2.61039 5.9255853 Lampetra 13103 Chordata Chordata 52.8 0.02   NTclustered gi|2805715542|emb|OZ078415.1| 7748 g34257 i0 100 0.39647577092511 28 0 12 0 195 222 12274400 12274427 Lampetra fluviatilis genome assembly, chromosome: 12 blastn 90 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
19250167 19250167 PRJEB58983_P_NODE_10016_length_394_cov_7.679128_g9601_i0 PRJEB58983 10016 394 7.679128 30.25576432 Mus musculus 10090 Chordata Chordata 324 7.23e-84   NTclustered gi|2904935057|gb|PQ737980.1| 10090 g9601 i0 84.639 8.1497461928934 332 43 84 8 44 372 384 58 Mus musculus lncRNA390 lncRNA, complete sequence blastn 3211 324 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
19250403 19250403 PRJEB58983_P_NODE_20636_length_286_cov_2.417840_g20221_i0 PRJEB58983 20636 286 2.41784 6.9150224 Lampetra planeri 7750 Chordata Chordata 52.8 0.026   NTclustered gi|2814985437|emb|OZ078366.2| 7750 g20221 i0 100 0.195804195804196 28 0 10 0 6 33 2979784 2979757 Lampetra planeri genome assembly, chromosome: 43 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
20525640 20525640 PRJEB58983_P_NODE_1457_length_1052_cov_78.716037_g1157_i0 PRJEB58983 1457 1052 78.716037 828.09270924 Mus musculus 10090 Chordata Chordata 331 1.23e-85   NTclustered gi|2904935199|gb|PQ738121.1| 10090 g1157 i0 74.885 0.82509505703422 868 149 81 52 4 856 15 828 Mus musculus lncRNA, complete sequence blastn 868 331 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;