RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJEB58983" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 12 ✖

bioproject 1

  • PRJEB58983 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2674964 2674964 PRJEB58983_P_NODE_24083_length_269_cov_2.096939_g23668_i0 PRJEB58983 24083 269 2.096939 5.64076591 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 357 4.66e-94   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g23668 i0 90.357 44.0371747211896 280 15 100 8 1 269 1622 1900 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 11846 357 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
6503014 6503014 PRJEB58983_P_NODE_18746_length_298_cov_1.515556_g18331_i0 PRJEB58983 18746 298 1.515556 4.51635688 Soliformovum irregulare 435424 Evosea other_Eukaryota 479 1.0699999999999999e-130   NTclustered gi|146448863|gb|EF513199.1| 435424 g18331 i0 95.638 91.503355704698 298 13 100 0 1 298 1046 749 Soliformovum irregulare elongation factor 1A (EF1A) gene, partial cds blastn 27268 479 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum irregulare
6503462 6503462 PRJEB58983_P_NODE_8426_length_427_cov_4.734463_g8012_i0 PRJEB58983 8426 427 4.734463 20.21615701 Paravannella minima 1443144 Discosea other_Eukaryota 108 8.66e-19   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g8012 i0 94.286 2.49648711943794 70 4 16 0 43 112 2789 2858 Paravannella minima mitochondrion, complete genome blastn 1066 108 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
12878668 12878668 PRJEB58983_P_NODE_30771_length_246_cov_0.872832_g30356_i0 PRJEB58983 30771 246 0.872832 2.14716672 Acytostelium subglobosum 361139 Evosea other_Eukaryota 148 2.75e-31   NTclustered gi|831766831|ref|XM_012896462.1| 1410327 g30356 i0 89.076 4.52845528455285 119 13 48 0 123 241 1 119 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 1114 148 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
16701381 16701381 PRJEB58983_P_NODE_13294_length_347_cov_3.091241_g12879_i0 PRJEB58983 13294 347 3.091241 10.72660627 Acytostelium leptosomum 133408 Evosea other_Eukaryota 263 1.39e-65   NTclustered gi|169930332|gb|EU360789.1| 133408 g12879 i0 81.994 81.5706051873199 311 54 89 2 1 310 176 485 Acytostelium leptosomum elongation factor 1 alpha gene, partial cds blastn 28305 263 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
16701758 16701758 PRJEB58983_P_NODE_32894_length_239_cov_2.716867_g32479_i0 PRJEB58983 32894 239 2.716867 6.49331213 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 259 1.18e-64   NTclustered gi|659103923|gb|KJ569725.1| 1512276 g32479 i0 92.021 23.4267782426778 188 10 78 4 1 186 695 879 Cochliopodium kieliense clone 9601 18S ribosomal RNA gene, partial sequence blastn 5599 259 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
17976281 17976281 PRJEB58983_P_NODE_13435_length_345_cov_8.525735_g13020_i0 PRJEB58983 13435 345 8.525735 29.41378575 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 233 1.09e-56   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g13020 i0 83.658 0.744927536231884 257 32 74 10 86 339 10317 10566 Thecamoeba quadrilineata mitochondrion, complete genome blastn 257 233 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata
20118602 20118602 PRJEB58983_P_NODE_18656_length_298_cov_4.448889_g18241_i0 PRJEB58983 18656 298 4.448889 13.25768922 Chaos 160821 Tubulinea other_Eukaryota 387 6.68e-103   NTclustered gi|17902587|emb|AJ314606.1| 160822 g18241 i0 90.033 97.3926174496644 301 26 100 4 1 298 1251 952 Chaos nobile partial 16S rRNA gene, strain CCAP 1511/2 blastn 29023 387 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos nobile
20525661 20525661 PRJEB58983_P_NODE_15457_length_325_cov_2.575397_g15042_i0 PRJEB58983 15457 325 2.575397 8.37004025 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 287 7.69e-73   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g15042 i0 82.875 5.88 327 49 99 5 1 323 10197 9874 Thecamoeba quadrilineata mitochondrion, complete genome blastn 1911 287 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata
21801594 21801594 PRJEB58983_P_NODE_22178_length_278_cov_2.282927_g21763_i0 PRJEB58983 22178 278 2.282927 6.34653706 Heterostelium pallidum 13642 Evosea other_Eukaryota 291 4.98e-74   NTclustered gi|160688721|gb|EU275726.1| 13642 g21763 i0 85.714 98.1151079136691 280 34 99 6 2 278 9499 9223 Polysphondylium pallidum strain PN500 mitochondrion, complete genome blastn 27276 291 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium pallidum
23077177 23077177 PRJEB58983_P_NODE_4559_length_572_cov_66.875752_g4150_i0 PRJEB58983 4559 572 66.875752 382.52930144 uncultured Soliformovum 2510342 Evosea other_Eukaryota 568 4.5299999999999986e-157   NTclustered gi|1564356923|gb|MK443523.1| 2510342 g4150 i0 91.932 42.6223776223776 409 28 71 3 165 572 425 21 Uncultured Soliformovum clone OTUA345 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 24380 568 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae   uncultured Soliformovum
23077188 23077188 PRJEB58983_P_NODE_5119_length_542_cov_7.985075_g4707_i0 PRJEB58983 5119 542 7.985075 43.2791065 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 117 1.86e-21   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g4707 i0 82.734 14.5350553505535 139 16 25 4 11 147 9848 9716 Thecamoeba quadrilineata mitochondrion, complete genome blastn 7878 117 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;