RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB56699" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB56699 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4819986 4819986 PRJEB56699_P_NODE_6044_length_178_cov_1.315436_g5814_i0 PRJEB56699 6044 178 1.315436 2.34147608 Streptococcus 1301 Bacteria Bacteria 329 6.21e-86   NTclustered gi|1140122741|gb|CP019562.1| 1303 g5814 i0 100 345.056179775281 178 0 100 0 1 178 1568768 1568945 Streptococcus oralis strain S.MIT/ORALIS-351 chromosome, complete genome blastn 61420 329 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis
5227153 5227153 PRJEB56699_P_NODE_6525_length_156_cov_7.976378_g6295_i0 PRJEB56699 6525 156 7.976378 12.44314968 Bacillota bacterium 1879010 Bacteria Bacteria 289 9e-74   NTclustered gi|1328374770|dbj|LC361041.1| 1879010 g6295 i0 100 119.333333333333 156 0 100 0 1 156 107 262 Firmicutes bacterium gene for 16S ribosomal RNA, partial sequence blastn 18616 289 1 Bacteria   Bacillati Bacillota         Bacillota bacterium
13745468 13745468 PRJEB56699_P_NODE_5911_length_184_cov_2.677419_g5681_i0 PRJEB56699 5911 184 2.677419 4.92645096 Streptococcus 1301 Bacteria Bacteria 340 2.99e-89   NTclustered gi|1140122741|gb|CP019562.1| 1303 g5681 i0 100 348.103260869565 184 0 100 0 1 184 1571258 1571441 Streptococcus oralis strain S.MIT/ORALIS-351 chromosome, complete genome blastn 64051 340 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis
22668933 22668933 PRJEB56699_P_NODE_6078_length_176_cov_1.897959_g5848_i0 PRJEB56699 6078 176 1.897959 3.34040784 Limosilactobacillus 2742598 Bacteria Bacteria 71.3 4.1e-8   NTclustered gi|2901660165|gb|CP179918.1| 1598 g5848 i0 95.455 13.4602272727273 44 2 25 0 130 173 412116 412159 Limosilactobacillus reuteri strain ZJ617 chromosome, complete genome blastn 2369 71.3 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;