RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB56027" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB56027 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
122898 122898 PRJEB56027_P_NODE_135321_length_235_cov_2.376543_g132512_i0 PRJEB56027 135321 235 2.376543 5.58487605 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 207 4.25e-49   NTclustered gi|2874254027|emb|OY970352.1| 171953 g132512 i0 82.553 2.85531914893617 235 41 100 0 1 235 37173 36939 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 671 207 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
7775066 7775066 PRJEB56027_P_NODE_126347_length_244_cov_2.409357_g123538_i0 PRJEB56027 126347 244 2.409357 5.87883108 Geothrix sp. PMB-07 3068640 Bacteria Bacteria 189 1.6099999999999996e-43   NTclustered gi|2563347696|gb|CP132333.1| 3068640 g123538 i0 81.148 50.3975409836066 244 38 98 8 1 240 721744 721505 Geothrix sp. PMB-07 chromosome, complete genome blastn 12297 189 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp. PMB-07
20524479 20524479 PRJEB56027_P_NODE_57517_length_381_cov_1.357143_g54708_i0 PRJEB56027 57517 381 1.357143 5.17071483 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 54.7 0.01   NTclustered gi|2874253836|emb|OY969886.1| 171953 g54708 i0 96.875 0.083989501312336 32 1 8 0 241 272 2338574 2338543 MAG: uncultured Acidobacteriota bacterium isolate MFD10007.bin.c.1 genome assembly, chromosome: 1 blastn 32 54.7 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
21799615 21799615 PRJEB56027_P_NODE_137018_length_229_cov_2.570513_g134209_i0 PRJEB56027 137018 229 2.570513 5.88647477 Thermoanaerobaculaceae bacterium 2699758 Bacteria Bacteria 145 3.28e-30   NTclustered gi|2874254005|emb|OY970330.1| 2699758 g134209 i0 78.972 15.2489082969432 214 43 93 2 17 229 6993884 6994096 MAG: Thermoanaerobaculaceae bacterium isolate MFD05537.bin.c.1 genome assembly, chromosome: 1 blastn 3492 145 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia Thermoanaerobaculales Thermoanaerobaculaceae   Thermoanaerobaculaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;