RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB55250" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJEB55250 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7369365 7369365 PRJEB55250_P_NODE_2106_length_448_cov_1.557333_g1983_i0 PRJEB55250 2106 448 1.557333 6.97685184 Naegleria 5761 Heterolobosea other_Eukaryota 520 9.89e-143   NTclustered gi|290973070|ref|XM_002669227.1| 5762 g1983 i0 90.025 81.3571428571429 401 40 90 0 48 448 1147 747 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_82840), mRNA blastn 36448 520 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
7774243 7774243 PRJEB55250_P_NODE_3747_length_352_cov_1.103943_g3623_i0 PRJEB55250 3747 352 1.103943 3.88587936 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 250 1.1e-61   NTclustered gi|2119431439|ref|XM_044702417.1| 5763 g3623 i0 79.943 2 349 62 98 8 1 345 180 524 Naegleria fowleri uncharacterized protein (FDP41_011951), partial mRNA blastn 704 250 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
9049076 9049076 PRJEB55250_P_NODE_5368_length_307_cov_3.290598_g5244_i0 PRJEB55250 5368 307 3.290598 10.10213586 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 388 1.92e-103   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g5244 i0 89.744 101.811074918567 312 20 100 9 1 307 3170 2866 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 31256 388 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
12875229 12875229 PRJEB55250_P_NODE_12711_length_249_cov_0.875000_g12587_i0 PRJEB55250 12711 249 0.875 2.17875 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 185 2.1299999999999994e-42   NTclustered gi|2119450329|ref|XM_044698277.1| 51637 g12587 i0 84.656 31.9397590361446 189 25 75 4 22 208 3951 3765 Naegleria lovaniensis uncharacterized protein (C9374_008224), partial mRNA blastn 7953 185 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
14150128 14150128 PRJEB55250_P_NODE_2072_length_451_cov_1.425926_g1949_i0 PRJEB55250 2072 451 1.425926 6.43092626 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 281 5.12e-71   NTclustered gi|290990436|ref|XM_002677797.1| 5762 g1949 i0 81.02 15.4434589800443 353 67 78 0 96 448 85 437 Naegleria gruberi ribosomal protein S7 (NAEGRDRAFT_39045), mRNA blastn 6965 281 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;