RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB55250" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJEB55250 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7774057 7774057 PRJEB55250_P_NODE_10347_length_258_cov_4.994595_g10223_i0 PRJEB55250 10347 258 4.994595 12.8860551 Desmochloris halophila 138176 Plants Plants 422 1.55e-113   NTclustered gi|371782086|emb|HE610118.1| 138176 g10223 i0 96.139 67.4496124031008 259 9 100 1 1 258 3715 3973 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 17402 422 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
10324654 10324654 PRJEB55250_P_NODE_10849_length_255_cov_1.659341_g10725_i0 PRJEB55250 10849 255 1.659341 4.23131955 Chlamydomonas reinhardtii 3055 Plants Plants 54.7 0.006   NTclustered gi|2082239373|ref|XM_001699987.2| 3055 g10725 i0 96.97 0.129411764705882 33 0 13 1 57 89 138 107 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_02g097900v5), mRNA blastn 33 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;