RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB55250" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJEB55250 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1396026 1396026 PRJEB55250_P_NODE_10602_length_257_cov_1.364130_g10478_i0 PRJEB55250 10602 257 1.36413 3.5058141 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 250 7.72e-62   NTclustered gi|1927958621|gb|CP054186.1| 2026777 g10478 i0 84.585 5.35408560311284 253 37 98 2 1 252 171141 170890 MAG: Phycisphaeraceae bacterium isolate H1_PLA1 chromosome blastn 1376 250 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
7774110 7774110 PRJEB55250_P_NODE_1267_length_573_cov_1.436000_g1147_i0 PRJEB55250 1267 573 1.436 8.22828 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 89.8 4.31e-13   NTclustered gi|2874253974|emb|OY970299.1| 412056 g1147 i0 87.179 0.654450261780105 78 10 14 0 466 543 2208510 2208587 MAG: uncultured Verrucomicrobiae bacterium isolate MFD09603.bin.1.43 genome assembly, chromosome: 1 blastn 375 89.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;