RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB55250" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJEB55250 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16698606 16698606 PRJEB55250_P_NODE_9054_length_268_cov_1.579487_g8930_i0 PRJEB55250 9054 268 1.579487 4.23302516 Heterostelium album 2086695 Evosea other_Eukaryota 174 5.02e-39   NTclustered gi|1160555008|ref|XM_020573329.1| 670386 g8930 i0 83.957 4.26119402985075 187 24 70 3 23 209 174 354 Polysphondylium pallidum PN500 annexin VII partial mRNA blastn 1142 174 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
20522698 20522698 PRJEB55250_P_NODE_17317_length_209_cov_5.367647_g17193_i0 PRJEB55250 17317 209 5.367647 11.21838223 Centropyxis aerophila 2898874 Tubulinea other_Eukaryota 315 2.12e-81   NTclustered gi|2156866368|gb|OL677465.1| 2898874 g17193 i0 99.422 30.1913875598086 173 1 83 0 37 209 920 748 Centropyxis aerophila voucher R61 small subunit ribosomal RNA gene, partial sequence blastn 6310 315 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Centropyxidae Centropyxis Centropyxis aerophila
21798514 21798514 PRJEB55250_P_NODE_1818_length_479_cov_11.201970_g1695_i0 PRJEB55250 1818 479 11.20197 53.6574363 Centropyxis aerophila 2898874 Tubulinea other_Eukaryota 885 0   NTclustered gi|2156866368|gb|OL677465.1| 2898874 g1695 i0 100 45.6868475991649 479 0 100 0 1 479 751 273 Centropyxis aerophila voucher R61 small subunit ribosomal RNA gene, partial sequence blastn 21884 885 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Centropyxidae Centropyxis Centropyxis aerophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;