RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB55122" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB55122 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2671247 2671247 PRJEB55122_P_NODE_35683_length_171_cov_3.057377_g35286_i0 PRJEB55122 35683 171 3.057377 5.22811467 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 292 7.75e-75   NTclustered gi|56757963|gb|AY815390.1| 6182 g35286 i0 97.661 100.140350877193 171 2 100 1 1 169 1294 1124 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 17124 292 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
5223936 5223936 PRJEB55122_P_NODE_6325_length_564_cov_1.984466_g5940_i0 PRJEB55122 6325 564 1.984466 11.19238824 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 54.7 0.015   NTclustered gi|690543028|emb|LN095937.1| 99802 g5940 i0 100 0.0514184397163121 29 0 5 0 448 476 58 86 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0091159 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
7773296 7773296 PRJEB55122_P_NODE_26187_length_209_cov_0.862500_g25790_i0 PRJEB55122 26187 209 0.8625 1.802625 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 56.5 0.001   NTclustered gi|687161626|emb|LN032089.1| 99802 g25790 i0 100 0.143540669856459 30 0 14 0 151 180 465 436 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0031438 blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
23944060 23944060 PRJEB55122_P_NODE_24599_length_217_cov_1.238095_g24202_i0 PRJEB55122 24599 217 1.238095 2.68666615 Lepidophyllum 116878 Platyhelminthes Platyhelminthes 102 1.88e-17   NTclustered gi|28273287|gb|AY157175.1| 116879 g24202 i0 79.592 2.03225806451613 147 27 67 3 36 181 1978 1834 Lepidophyllum steenstrupi 28S large subunit ribosomal RNA gene, partial sequence blastn 441 102 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Zoogonidae Lepidophyllum Lepidophyllum steenstrupi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;