RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB55122" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB55122 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2267035 2267035 PRJEB55122_P_NODE_6562_length_550_cov_2.069860_g6176_i0 PRJEB55122 6562 550 2.06986 11.38423 Metazoa 33208 Nematoda Nematoda 1016 0   NTclustered gi|158821895|gb|EU195959.1| 479134 g6176 i0 100 74.6472727272727 550 0 100 0 1 550 1349 1898 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 41056 1016 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
9048633 9048633 PRJEB55122_P_NODE_44008_length_159_cov_2.263636_g43611_i0 PRJEB55122 44008 159 2.263636 3.59918124 Caenorhabditis elegans 6239 Nematoda Nematoda 215 1.59e-51   NTclustered gi|1972264646|ref|NM_066119.9| 6239 g43611 i0 91.139 89.8993710691824 158 14 99 0 1 158 369 526 Caenorhabditis elegans Elongation factor 1-alpha (eef-1A.1), mRNA blastn 14294 215 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23073551 23073551 PRJEB55122_P_NODE_7959_length_478_cov_1.312354_g7567_i0 PRJEB55122 7959 478 1.312354 6.27305212 Caenorhabditis elegans 6239 Nematoda Nematoda 182 5.69e-41   NTclustered gi|1972261274|ref|NM_001384026.2| 6239 g7567 i0 80.591 17.907949790795 237 44 49 2 221 456 138 373 Caenorhabditis elegans ATP synthase c subunit (Y82E9BR.3), mRNA blastn 8560 182 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;