RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB55122" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB55122 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9048248 9048248 PRJEB55122_P_NODE_29748_length_193_cov_0.888889_g29351_i0 PRJEB55122 29748 193 0.888889 1.71555577 Bradybaena similaris 145626 Mollusca Mollusca 63.9 7.69e-6   NTclustered gi|2913001816|dbj|AP039609.1| 145626 g29351 i0 97.297 13.3212435233161 37 1 19 0 21 57 5279422 5279458 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 28, sequence blastn 2571 63.9 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
11195109 11195109 PRJEB55122_P_NODE_13149_length_333_cov_1.056338_g12752_i0 PRJEB55122 13149 333 1.056338 3.51760554 Metazoa 33208 Mollusca Mollusca 276 1.71e-69   NTclustered gi|2572439903|ref|XM_059287523.1| 109671 g12752 i0 83.793 87.7207207207207 290 47 87 0 4 293 731 1020 PREDICTED: Physella acuta endoplasmic reticulum chaperone BiP (LOC131930863), mRNA blastn 29211 278 0.992805755395683 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Physidae Physella Physella acuta
12874506 12874506 PRJEB55122_P_NODE_28471_length_198_cov_1.355705_g28074_i0 PRJEB55122 28471 198 1.355705 2.6842959 Ylistrum balloti 509963 Mollusca Mollusca 128 2.77e-25   NTclustered gi|2592068471|ref|XM_060214011.1| 509963 g28074 i0 78.836 9.76262626262626 189 40 95 0 10 198 98 286 PREDICTED: Ylistrum balloti large ribosomal subunit protein eL30 (LOC132550014), mRNA blastn 1933 128 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Ylistrum Ylistrum balloti
21797962 21797962 PRJEB55122_P_NODE_38098_length_167_cov_2.203390_g37701_i0 PRJEB55122 38098 167 2.20339 3.6796613 Physella acuta 109671 Mollusca Mollusca 52.8 0.014   NTclustered gi|2572411827|ref|XM_059320587.1| 109671 g37701 i0 96.774 0.18562874251497 31 1 19 0 7 37 2135 2165 PREDICTED: Physella acuta uncharacterized LOC131956164 (LOC131956164), mRNA blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Physidae Physella Physella acuta
24346886 24346886 PRJEB55122_P_NODE_30280_length_191_cov_1.098592_g29883_i0 PRJEB55122 30280 191 1.098592 2.09831072 Sypharochiton sinclairi 1117399 Mollusca Mollusca 115 2.07e-21   NTclustered gi|642276541|ref|NC_024173.1| 1117399 g29883 i0 89.13 50.0314136125654 92 10 48 0 2 93 9475 9384 Sypharochiton sinclairi mitochondrion, complete genome blastn 9556 115 1 Eukaryota Opisthokonta Metazoa Mollusca Polyplacophora Chitonida Chitonidae Sypharochiton Sypharochiton sinclairi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;