RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJEB55122" and tax_phylum = "Microsporidia"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB55122 · 13 ✖

analysis 1

  • blastn · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
121163 121163 PRJEB55122_P_NODE_35201_length_173_cov_1.669355_g34804_i0 PRJEB55122 35201 173 1.669355 2.88798415 Vittaforma corneae 42399 Fungi Fungi 176 8.26e-40   NTclustered gi|667639983|ref|XR_552275.1| 993615 g34804 i0 86.061 3.79768786127168 165 22 95 1 1 164 977 1141 Vittaforma corneae ATCC 50505 28S ribosomal RNA (VICG_02297), rRNA blastn 657 176 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vittaforma Vittaforma corneae
2671060 2671060 PRJEB55122_P_NODE_29843_length_192_cov_1.664336_g29446_i0 PRJEB55122 29843 192 1.664336 3.19552512 Vittaforma corneae 42399 Fungi Fungi 226 9.209999999999997e-55   NTclustered gi|667639983|ref|XR_552275.1| 993615 g29446 i0 88.421 3.53645833333333 190 18 98 3 5 192 2405 2218 Vittaforma corneae ATCC 50505 28S ribosomal RNA (VICG_02297), rRNA blastn 679 226 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vittaforma Vittaforma corneae
2671069 2671069 PRJEB55122_P_NODE_30063_length_191_cov_2.788732_g29666_i0 PRJEB55122 30063 191 2.788732 5.32647812 Vittaforma corneae 42399 Fungi Fungi 156 1.22e-33   NTclustered gi|667639983|ref|XR_552275.1| 993615 g29666 i0 92.661 0.570680628272251 109 6 57 2 19 126 186 79 Vittaforma corneae ATCC 50505 28S ribosomal RNA (VICG_02297), rRNA blastn 109 156 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vittaforma Vittaforma corneae
3946889 3946889 PRJEB55122_P_NODE_24504_length_217_cov_3.511905_g24107_i0 PRJEB55122 24504 217 3.511905 7.62083385 Endoreticulatus sp. CHW-2004 Taiwan 262393 Fungi Fungi 117 6.700000000000001e-22   NTclustered gi|63095238|gb|AY960111.1| 262393 g24107 i0 79.878 1.28571428571429 164 29 75 4 55 217 1943 1783 Endoreticulatus sp. CHW-2004 Taiwan large subunit ribosomal RNA gene, complete sequence blastn 279 117 1 Eukaryota Opisthokonta Fungi Microsporidia       Endoreticulatus Endoreticulatus sp. CHW-2004 Taiwan
3947235 3947235 PRJEB55122_P_NODE_34604_length_175_cov_1.626984_g34207_i0 PRJEB55122 34604 175 1.626984 2.847222 Pleistophora mulleri 249366 Fungi Fungi 302 1.33e-77   NTclustered gi|134147422|gb|EF119339.1| 249366 g34207 i0 97.714 52.8 175 4 100 0 1 175 2863 3037 Pleistophora mulleri 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 9240 302 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Pleistophora Pleistophora mulleri
7772693 7772693 PRJEB55122_P_NODE_10187_length_400_cov_3.245014_g9793_i0 PRJEB55122 10187 400 3.245014 12.980056 Parahepatospora carcini 1892323 Fungi Fungi 394 5.53e-105   NTclustered gi|1059045654|gb|KX757849.1| 1892323 g9793 i0 84.938 92.3125 405 43 98 14 1 392 587 188 Parahepatospora carcini isolate RA14060_326 18S ribosomal RNA gene, partial sequence blastn 36925 394 1 Eukaryota Opisthokonta Fungi Microsporidia       Parahepatospora Parahepatospora carcini
12874881 12874881 PRJEB55122_P_NODE_42051_length_163_cov_1.368421_g41654_i0 PRJEB55122 42051 163 1.368421 2.23052623 Pseudoloma neurophilia 146866 Fungi Fungi 302 1.22e-77   NTclustered gi|11993647|gb|AF322654.1| 146866 g41654 i0 100 100.006134969325 163 0 100 0 1 163 1716 1554 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16301 302 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
13745191 13745191 PRJEB55122_P_NODE_13651_length_324_cov_2.436364_g13254_i0 PRJEB55122 13651 324 2.436364 7.89381936 Thelohaniidae 72220 Fungi Fungi 244 4.6799999999999996e-60   NTclustered gi|539395532|gb|KF549987.1| 366552 g13254 i0 81.23 8.23148148148148 309 53 94 5 1 306 1171 865 Agmasoma penaei isolate Ap_12-113 16S ribosomal RNA gene, partial sequence blastn 2667 244 1 Eukaryota Opisthokonta Fungi Microsporidia     Thelohaniidae Agmasoma Agmasoma penaei
19246453 19246453 PRJEB55122_P_NODE_26836_length_205_cov_2.000000_g26439_i0 PRJEB55122 26836 205 2 4.1 Glugoides intestinalis 174680 Fungi Fungi 200 6.039999999999999e-47   NTclustered gi|113470856|gb|DQ680157.2| 174680 g26439 i0 84.466 42.819512195122 206 29 100 3 1 205 1623 1420 Glugoides intestinalis isolate Gi2 23S ribosomal RNA gene, partial sequence; 23S-16S ribosomal RNA spacer, complete sequence; and 16S ribosomal RNA gene, partial sequence blastn 8778 200 1 Eukaryota Opisthokonta Fungi Microsporidia     Glugeidae Glugoides Glugoides intestinalis
19246765 19246765 PRJEB55122_P_NODE_3656_length_806_cov_2.260238_g3350_i0 PRJEB55122 3656 806 2.260238 18.21751828 Pseudoloma neurophilia 146866 Fungi Fungi 1424 0   NTclustered gi|11993647|gb|AF322654.1| 146866 g3350 i0 98.284 98.0359801488834 816 4 100 1 1 806 14 829 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 79017 1424 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
20521234 20521234 PRJEB55122_P_NODE_11277_length_372_cov_1.448916_g10880_i0 PRJEB55122 11277 372 1.448916 5.38996752 uncultured Microsporidia 546760 Fungi Fungi 407 6.55e-109   NTclustered gi|1372080755|gb|MG241431.1| 546760 g10880 i0 87.363 89.6720430107527 364 35 97 10 14 372 387 30 Uncultured Microsporidia clone OTU51 small subunit ribosomal RNA gene, partial sequence blastn 33358 407 1 Eukaryota Opisthokonta Fungi Microsporidia         uncultured Microsporidia
20521535 20521535 PRJEB55122_P_NODE_1997_length_1125_cov_3.001859_g1783_i0 PRJEB55122 1997 1125 3.001859 33.77091375 Endoreticulatus sp. CHW-2004 Taiwan 262393 Fungi Fungi 374 2.15e-98   NTclustered gi|63095238|gb|AY960111.1| 262393 g1783 i0 79.138 14.2773333333333 580 92 69 22 1 578 36 588 Endoreticulatus sp. CHW-2004 Taiwan large subunit ribosomal RNA gene, complete sequence blastn 16062 374 1 Eukaryota Opisthokonta Fungi Microsporidia       Endoreticulatus Endoreticulatus sp. CHW-2004 Taiwan
23072754 23072754 PRJEB55122_P_NODE_22599_length_229_cov_1.444444_g22202_i0 PRJEB55122 22599 229 1.444444 3.30777676 Vavraia culicis 103449 Fungi Fungi 327 3.03e-85   NTclustered gi|667636757|ref|XR_552273.1| 948595 g22202 i0 92.889 18.6288209606987 225 16 98 0 5 229 1048 824 Vavraia culicis subsp. floridensis 28S ribosomal RNA (VCUG_02832), partial rRNA blastn 4266 327 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Vavraia Vavraia culicis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;