RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

32 rows where analysis = "blastn", bioproject = "PRJEB55122" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 32 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB55122 · 32 ✖

analysis 1

  • blastn · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
120882 120882 PRJEB55122_P_NODE_26721_length_206_cov_1.324841_g26324_i0 PRJEB55122 26721 206 1.324841 2.72917246 Xenopus laevis 8355 Chordata Chordata 56.5 0.001   NTclustered gi|2038147616|ref|XM_041583674.1| 8355 g26324 i0 100 1.03883495145631 30 0 15 0 105 134 3045 3074 PREDICTED: Xenopus laevis protein kinase C delta type-like (LOC121393110), transcript variant X2, mRNA blastn 214 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
121288 121288 PRJEB55122_P_NODE_39661_length_166_cov_0.888889_g39264_i0 PRJEB55122 39661 166 0.888889 1.47555574 Castor canadensis 51338 Chordata Chordata 56.5 0.001   NTclustered gi|1147279404|ref|XM_020165778.1| 51338 g39264 i0 96.97 0.198795180722892 33 1 20 0 72 104 873 905 PREDICTED: Castor canadensis zinc finger protein 426-like (LOC109687762), mRNA blastn 33 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Castoridae Castor Castor canadensis
121329 121329 PRJEB55122_P_NODE_41561_length_164_cov_0.904348_g41164_i0 PRJEB55122 41561 164 0.904348 1.48313072 Equus caballus 9796 Chordata Chordata 93.5 8.07e-15   NTclustered gi|1174820001|emb|LT745777.1| 9796 g41164 i0 81.356 2.05487804878049 118 18 70 3 1 115 798065 797949 Equus caballus MHC class II region on chromosome ECA20 blastn 337 93.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus caballus
3542299 3542299 PRJEB55122_P_NODE_21243_length_239_cov_1.000000_g20846_i0 PRJEB55122 21243 239 1 2.39 Canidae 9608 Chordata Chordata 233 7.149999999999999e-57   NTclustered gi|1435643097|ref|XM_026013303.1| 9627 g20846 i0 90.503 465.142259414226 179 14 74 2 54 230 5816 5639 PREDICTED: Vulpes vulpes unc-13 homolog B (UNC13B), transcript variant X11, mRNA blastn 111169 235 0.991489361702128 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Vulpes Vulpes vulpes
3947316 3947316 PRJEB55122_P_NODE_37624_length_168_cov_0.873950_g37227_i0 PRJEB55122 37624 168 0.87395 1.468236 Nannospalax galili 1026970 Chordata Chordata 54.7 0.004   NTclustered gi|1691676671|ref|XM_017798637.2| 1026970 g37227 i0 96.875 0.571428571428571 32 1 19 0 101 132 638 669 PREDICTED: Nannospalax galili ASXL transcriptional regulator 2 (Asxl2), transcript variant X2, mRNA blastn 96 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Spalacidae Nannospalax Nannospalax galili
4819725 4819725 PRJEB55122_P_NODE_38844_length_167_cov_0.881356_g38447_i0 PRJEB55122 38844 167 0.881356 1.47186452 Metazoa 33208 Chordata Chordata 84.2 4.97e-12   NTclustered gi|2119025671|ref|XM_044082185.1| 7888 g38447 i0 90.909 2.59880239520958 66 0 36 2 96 155 100 35 PREDICTED: Protopterus annectens KRAB-A domain-containing protein 2-like (LOC122810609), mRNA blastn 434 84.2 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
5223108 5223108 PRJEB55122_P_NODE_19825_length_249_cov_2.030000_g19428_i0 PRJEB55122 19825 249 2.03 5.0547 Microcaecilia unicolor 1415580 Chordata Chordata 159 1.29e-34   NTclustered gi|1716989415|ref|XM_030216451.1| 1415580 g19428 i0 84.568 40.7429718875502 162 24 65 1 4 164 319 158 PREDICTED: Microcaecilia unicolor eukaryotic translation initiation factor 5A2 (EIF5A2), mRNA blastn 10145 159 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Siphonopidae Microcaecilia Microcaecilia unicolor
6499327 6499327 PRJEB55122_P_NODE_32846_length_181_cov_1.575758_g32449_i0 PRJEB55122 32846 181 1.575758 2.85212198 Xenopus tropicalis 8364 Chordata Chordata 106 1.16e-18   NTclustered gi|56971577|gb|BC088544.1| 8364 g32449 i0 81.746 67.7292817679558 126 23 70 0 56 181 781 656 Xenopus tropicalis hypothetical LOC496939, mRNA (cDNA clone MGC:97690 IMAGE:6983481), complete cds blastn 12259 106 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
7773655 7773655 PRJEB55122_P_NODE_36887_length_169_cov_0.866667_g36490_i0 PRJEB55122 36887 169 0.866667 1.46466723 Rhinolophus sinicus 89399 Chordata Chordata 52.8 0.014   NTclustered gi|1123950445|ref|XM_019733032.1| 89399 g36490 i0 100 0.165680473372781 28 0 17 0 58 85 1306 1333 PREDICTED: Rhinolophus sinicus proline rich 29 (PRR29), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Rhinolophidae Rhinolophus Rhinolophus sinicus
9048107 9048107 PRJEB55122_P_NODE_25568_length_211_cov_5.790123_g25171_i0 PRJEB55122 25568 211 5.790123 12.21715953 Mus musculus 10090 Chordata Chordata 52.8 0.019   NTclustered gi|57470703|gb|AC151530.2| 10090 g25171 i0 100 0.265402843601896 28 0 13 0 84 111 152841 152814 Mus musculus BAC clone RP24-330K6 from 13, complete sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
9048504 9048504 PRJEB55122_P_NODE_37868_length_168_cov_0.873950_g37471_i0 PRJEB55122 37868 168 0.87395 1.468236 Pogona vitticeps 103695 Chordata Chordata 91.6 2.99e-14   NTclustered gi|1176288132|ref|XM_020790656.1| 103695 g37471 i0 83.505 0.976190476190476 97 16 58 0 1 97 1721 1817 PREDICTED: Pogona vitticeps aldehyde dehydrogenase 7 family member A1 (ALDH7A1), mRNA blastn 164 91.6 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Agamidae Pogona Pogona vitticeps
9919956 9919956 PRJEB55122_P_NODE_30908_length_188_cov_1.776978_g30511_i0 PRJEB55122 30908 188 1.776978 3.34071864 Corvus 30420 Chordata Chordata 52.8 0.016   NTclustered gi|2052013106|ref|XR_006015839.1| 68294 g30511 i0 100 1.19148936170213 28 0 15 0 96 123 3431 3404 PREDICTED: Corvus kubaryi uncharacterized LOC121664000 (LOC121664000), ncRNA blastn 224 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Corvidae Corvus Corvus kubaryi
10323621 10323621 PRJEB55122_P_NODE_19569_length_252_cov_1.098522_g19172_i0 PRJEB55122 19569 252 1.098522 2.76827544 Taeniopygia guttata 59729 Chordata Chordata 52.8 0.023   NTclustered gi|2043863121|ref|XM_041711709.1| 59729 g19172 i0 100 0.222222222222222 28 0 11 0 49 76 64 37 PREDICTED: Taeniopygia guttata C-type lectin domain family 4 member M (LOC115491624), transcript variant X1, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Estrildidae Taeniopygia Taeniopygia guttata
11599641 11599641 PRJEB55122_P_NODE_36970_length_169_cov_0.866667_g36573_i0 PRJEB55122 36970 169 0.866667 1.46466723 Rhineura floridana 261503 Chordata Chordata 158 2.91e-34   NTclustered gi|2636966452|ref|XM_061605020.1| 261503 g36573 i0 83.529 100.437869822485 170 26 100 2 1 169 532 364 PREDICTED: Rhineura floridana ribosomal protein L23a (RPL23A), mRNA blastn 16974 158 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Rhineuridae Rhineura Rhineura floridana
12874801 12874801 PRJEB55122_P_NODE_38451_length_167_cov_0.881356_g38054_i0 PRJEB55122 38451 167 0.881356 1.47186452 Sus scrofa 9823 Chordata Chordata 117 4.900000000000001e-22   NTclustered gi|1353679|gb|U42362.1|SSU42362 9823 g38054 i0 82.946 1.54491017964072 129 22 77 0 13 141 218 90 Sus scrofa centromere-specific repeat, T27M clone, Mc2 satellite DNA amplified from S0048 primer set blastn 258 117 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
12874853 12874853 PRJEB55122_P_NODE_40671_length_165_cov_0.896552_g40274_i0 PRJEB55122 40671 165 0.896552 1.4793108 Equus caballus 9796 Chordata Chordata 115 1.73e-21   NTclustered gi|157389797|emb|AM420315.1| 9796 g40274 i0 81.29 4.0969696969697 155 17 88 8 21 165 154996 154844 Equus caballus genomic BAC clone CH241-440E11, containing KIT gene blastn 676 115 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus caballus
14149222 14149222 PRJEB55122_P_NODE_26752_length_206_cov_1.191083_g26355_i0 PRJEB55122 26752 206 1.191083 2.45363098 Pleurodeles waltl 8319 Chordata Chordata 52.8 0.018   NTclustered gi|2833161995|ref|XM_069217021.1| 8319 g26355 i0 100 1.22330097087379 28 0 14 0 145 172 2170 2197 PREDICTED: Pleurodeles waltl uncharacterized protein (LOC138267809), transcript variant X4, mRNA blastn 252 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
14149567 14149567 PRJEB55122_P_NODE_37572_length_168_cov_0.873950_g37175_i0 PRJEB55122 37572 168 0.87395 1.468236 Canis lupus 9612 Chordata Chordata 187 3.71e-43   NTclustered gi|116174919|gb|AC187012.11| 9615 g37175 i0 90.345 51.6309523809524 145 10 85 3 21 163 153204 153062 Canis Familiaris chromosome 23, clone XX-155L5, complete sequence blastn 8674 187 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
15422893 15422893 PRJEB55122_P_NODE_16173_length_286_cov_2.194093_g15776_i0 PRJEB55122 16173 286 2.194093 6.27510598 Sorex fumeus 62283 Chordata Chordata 231 3.16e-56   NTclustered gi|2506778439|ref|XM_056138892.1| 62283 g15776 i0 85.088 70.2027972027972 228 32 79 2 27 253 318 92 PREDICTED: Sorex fumeus ribosomal protein S15a (RPS15A), mRNA blastn 20078 231 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Sorex Sorex fumeus
16698003 16698003 PRJEB55122_P_NODE_41694_length_164_cov_0.904348_g41297_i0 PRJEB55122 41694 164 0.904348 1.48313072 Canis lupus 9612 Chordata Chordata 298 1.59e-76   NTclustered gi|116175021|gb|AC188936.4| 9615 g41297 i0 99.39 4.78658536585366 164 1 100 0 1 164 106256 106419 Canis Familiaris chromosome 14, clone XX-483F1, complete sequence blastn 785 298 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
18843375 18843375 PRJEB55122_P_NODE_41055_length_164_cov_1.495652_g40658_i0 PRJEB55122 41055 164 1.495652 2.45286928 Canis 9611 Chordata Chordata 303 3.42e-78   NTclustered gi|1953275112|ref|XR_005433151.1| 9615 g40658 i0 100 27.9451219512195 164 0 100 0 1 164 1700 1863 PREDICTED: Canis lupus familiaris uncharacterized LOC102151964 (LOC102151964), transcript variant X4, ncRNA blastn 4583 303 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
19246882 19246882 PRJEB55122_P_NODE_41316_length_164_cov_0.904348_g40919_i0 PRJEB55122 41316 164 0.904348 1.48313072 Sus scrofa 9823 Chordata Chordata 95.3 2.24e-15   NTclustered gi|310772274|emb|CU463953.7| 9823 g40919 i0 86.022 13.3536585365854 93 7 54 6 1 88 74182 74091 Pig DNA sequence from clone CH242-100L3 on chromosome X, complete sequence blastn 2190 95.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
20118304 20118304 PRJEB55122_P_NODE_8896_length_442_cov_3.165394_g8502_i0 PRJEB55122 8896 442 3.165394 13.99104148 Equus 9789 Chordata Chordata 56.5 0.003   NTclustered gi|2871614656|ref|XM_044773482.2| 9793 g8502 i0 100 1.84615384615385 30 0 7 0 6 35 2545 2516 PREDICTED: Equus asinus SEH1 like nucleoporin (SEH1L), transcript variant X2, mRNA blastn 816 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus asinus
20521985 20521985 PRJEB55122_P_NODE_33197_length_180_cov_1.305344_g32800_i0 PRJEB55122 33197 180 1.305344 2.3496192 Sus scrofa 9823 Chordata Chordata 327 2.2699999999999996e-85   NTclustered gi|306439042|emb|FP103051.7| 9823 g32800 i0 99.444 1 180 1 100 0 1 180 146804 146983 Pig DNA sequence from clone CH242-71D22 on chromosome X, complete sequence blastn 180 327 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
20522172 20522172 PRJEB55122_P_NODE_39697_length_166_cov_0.888889_g39300_i0 PRJEB55122 39697 166 0.888889 1.47555574 Canis lupus 9612 Chordata Chordata 65.8 1.79e-6   NTclustered gi|2272609522|ref|XR_007405826.1| 286419 g39300 i0 91.489 11.6024096385542 47 4 28 0 8 54 1079 1125 PREDICTED: Canis lupus dingo uncharacterized LOC112669583 (LOC112669583), transcript variant X2, ncRNA blastn 1926 65.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
20522218 20522218 PRJEB55122_P_NODE_41277_length_164_cov_0.904348_g40880_i0 PRJEB55122 41277 164 0.904348 1.48313072 Sus scrofa 9823 Chordata Chordata 78.7 2.26e-10   NTclustered gi|238653017|emb|FP085364.4| 9823 g40880 i0 87.879 2.90243902439024 66 8 40 0 2 67 31424 31489 Pig DNA sequence from clone CH242-185L24 on chromosome X, complete sequence blastn 476 78.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
21797456 21797456 PRJEB55122_P_NODE_23138_length_225_cov_2.323864_g22741_i0 PRJEB55122 23138 225 2.323864 5.228694 Polypterus senegalus 55291 Chordata Chordata 54.7 0.006   NTclustered gi|1993940282|ref|XM_039743370.1| 55291 g22741 i0 92.105 0.337777777777778 38 3 17 0 1 38 2126 2163 PREDICTED: Polypterus senegalus uncharacterized LOC120522434 (LOC120522434), transcript variant X1, mRNA blastn 76 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
21797699 21797699 PRJEB55122_P_NODE_29618_length_193_cov_1.715278_g29221_i0 PRJEB55122 29618 193 1.715278 3.31048654 Alligator mississippiensis 8496 Chordata Chordata 104 4.53e-18   NTclustered gi|2580411141|ref|XM_059732011.1| 8496 g29221 i0 81.203 9.12435233160622 133 21 68 4 12 142 170 40 PREDICTED: Alligator mississippiensis ribosomal protein L38 (RPL38), transcript variant X2, mRNA blastn 1761 104 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator mississippiensis
22668675 22668675 PRJEB55122_P_NODE_20418_length_245_cov_0.826531_g20021_i0 PRJEB55122 20418 245 0.826531 2.02500095 Metazoa 33208 Chordata Chordata 52.8 0.022   NTclustered gi|1822378177|ref|XM_032956464.1| 7757 g20021 i0 100 0.685714285714286 28 0 11 0 217 244 12242 12269 PREDICTED: Petromyzon marinus KIAA1109 ortholog (KIAA1109), transcript variant X3, mRNA blastn 168 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
23072706 23072706 PRJEB55122_P_NODE_21279_length_238_cov_2.417989_g20882_i0 PRJEB55122 21279 238 2.417989 5.75481382 Latimeria chalumnae 7897 Chordata Chordata 54.7 0.006   NTclustered gi|2721749050|ref|XM_005986866.2| 7897 g20882 i0 100 0.121848739495798 29 0 12 0 63 91 2346 2374 PREDICTED: Latimeria chalumnae frizzled-9 (LOC102349865), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
23072877 23072877 PRJEB55122_P_NODE_26179_length_209_cov_0.968750_g25782_i0 PRJEB55122 26179 209 0.96875 2.0246875 Lacerta agilis 80427 Chordata Chordata 52.8 0.018   NTclustered gi|1825699434|ref|XM_033167609.1| 80427 g25782 i0 100 0.133971291866029 28 0 13 0 130 157 636 609 PREDICTED: Lacerta agilis HD domain containing 3 (HDDC3), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Lacertidae Lacerta Lacerta agilis
23944085 23944085 PRJEB55122_P_NODE_6919_length_531_cov_2.014523_g6530_i0 PRJEB55122 6919 531 2.014523 10.69711713 Opisthokonta 33154 Chordata Chordata 313 2.17e-80   NTclustered gi|2512239970|ref|XM_056540412.1| 327740 g6530 i0 79.601 82.7306967984934 451 81 84 11 32 476 490 45 PREDICTED: Hyla sarda ribosomal protein S18 (RPS18), mRNA blastn 43930 315 0.993650793650794 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;