RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB55122" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB55122 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10324097 10324097 PRJEB55122_P_NODE_32829_length_181_cov_1.575758_g32432_i0 PRJEB55122 32829 181 1.575758 2.85212198 Plasmodium chabaudi 5825 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.001   NTclustered gi|1027949921|ref|XR_001678647.1| 31271 g32432 i0 78.261 1.28176795580111 92 16 50 3 92 181 1465 1376 Plasmodium chabaudi chabaudi 28S ribosomal RNA (PCHAS_0521461), rRNA blastn 232 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
16294476 16294476 PRJEB55122_P_NODE_533_length_1933_cov_3.856157_g449_i0 PRJEB55122 533 1933 3.856157 74.53951481 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 60.2 0.001   NTclustered gi|2785757308|ref|XM_067215750.1| 5824 g449 i0 100 0.033109156751164 32 0 2 0 1216 1247 883 914 Plasmodium brasilianum Cg2 protein (MKS88_000468), partial mRNA blastn 64 60.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;