RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB55122" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJEB55122 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6498646 6498646 PRJEB55122_P_NODE_14026_length_318_cov_1.862454_g13629_i0 PRJEB55122 14026 318 1.862454 5.92260372 Deinococcus sp. NW-56 2080419 Bacteria Bacteria 425 1.52e-114   NTclustered gi|1339790003|gb|CP026516.1| 2080419 g13629 i0 90.909 239.471698113208 319 20 100 3 1 318 544259 544569 Deinococcus sp. NW-56 chromosome, complete genome blastn 76152 425 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. NW-56
11195135 11195135 PRJEB55122_P_NODE_43869_length_161_cov_2.660714_g43472_i0 PRJEB55122 43869 161 2.660714 4.28374954 Deinococcus 1298 Bacteria Bacteria 244 2.06e-60   NTclustered gi|1435316362|gb|CP031158.1| 980427 g43472 i0 94.375 193.142857142857 160 8 99 1 3 161 1793337 1793178 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 31096 244 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
17569599 17569599 PRJEB55122_P_NODE_21994_length_233_cov_1.603261_g21597_i0 PRJEB55122 21994 233 1.603261 3.73559813 Deinococcus 1298 Bacteria Bacteria 342 1.0999999999999999e-89   NTclustered gi|470486828|ref|NR_076782.1| 502394 g21597 i0 94.222 201.326180257511 225 12 96 1 1 224 2043 2267 Deinococcus gobiensis strain I-0 23S ribosomal RNA gene, complete sequence blastn 46909 342 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus gobiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;