RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB55122" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJEB55122 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
120693 120693 PRJEB55122_P_NODE_20801_length_242_cov_1.336788_g20404_i0 PRJEB55122 20801 242 1.336788 3.23502696 Vannella epipetala 411637 Discosea other_Eukaryota 276 1.19e-69   NTclustered gi|117626946|gb|DQ913098.1| 411637 g20404 i0 87.815 86.8636363636364 238 25 97 3 1 234 310 73 Vannella epipetala clone 6 18S ribosomal RNA gene, partial sequence blastn 21021 276 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella epipetala
16697688 16697688 PRJEB55122_P_NODE_30654_length_189_cov_1.607143_g30257_i0 PRJEB55122 30654 189 1.607143 3.03750027 Vannella pentlandii 2023062 Discosea other_Eukaryota 272 1.1399999999999998e-68   NTclustered gi|1226859168|gb|KY344796.1| 2023062 g30257 i0 93.011 91.7142857142857 186 13 98 0 4 189 737 552 Vannella pentlandii culture CCAP:1589/23 18S ribosomal RNA gene, partial sequence blastn 17334 272 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella pentlandii
21797554 21797554 PRJEB55122_P_NODE_25798_length_210_cov_2.260870_g25401_i0 PRJEB55122 25798 210 2.26087 4.747827 Dictyostelium discoideum 44689 Evosea other_Eukaryota 117 6.44e-22   NTclustered gi|66802102|ref|XM_629843.1| 352472 g25401 i0 79.878 1.2952380952381 164 29 77 4 42 203 558 397 Dictyostelium discoideum AX4 proteasome subunit alpha type 2 (psmA2) mRNA, complete cds blastn 272 117 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
24346652 24346652 PRJEB55122_P_NODE_23300_length_224_cov_3.068571_g22903_i0 PRJEB55122 23300 224 3.068571 6.87359904 Vannella sp. 1973054 Discosea other_Eukaryota 357 3.77e-94   NTclustered gi|1212004550|gb|MF399033.1| 1973054 g22903 i0 95.516 88.4642857142857 223 10 99 0 1 223 144 366 Vannella sp. isolate PA13 small subunit ribosomal RNA gene, partial sequence blastn 19816 357 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;