RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB50765" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB50765 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13744767 13744767 PRJEB50765_P_NODE_1071_length_308_cov_2.405904_g1047_i0 PRJEB50765 1071 308 2.405904 7.41018432 Caenorhabditis 6237 Nematoda Nematoda 265 3.39e-66   NTclustered gi|268559799|ref|XM_002646027.1| 6238 g1047 i0 87.446 76.4415584415584 231 27 75 2 77 306 1307 1078 Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA blastn 23544 265 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
14147887 14147887 PRJEB50765_P_NODE_2352_length_184_cov_3.183673_g2328_i0 PRJEB50765 2352 184 3.183673 5.85795832 Caenorhabditis elegans 6239 Nematoda Nematoda 202 1.47e-47   NTclustered gi|1972294218|ref|NM_001380754.2| 6239 g2328 i0 86.413 97.8858695652174 184 25 100 0 1 184 86 269 Caenorhabditis elegans Actin-3 (act-3), mRNA blastn 18011 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;