RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB50765" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB50765 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
119552 119552 PRJEB50765_P_NODE_1221_length_280_cov_1.765432_g1197_i0 PRJEB50765 1221 280 1.765432 4.9432096 Trichosporon ovoides 82524 Fungi Fungi 161 4.11e-35   NTclustered gi|921330234|dbj|AB920025.1| 82524 g1197 i0 80.66 18.0892857142857 212 37 75 4 71 280 67 276 Trichosporon ovoides gene for Ras2, complete sequence, strain: JCM 9940 blastn 5065 161 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Trichosporonales Trichosporonaceae Trichosporon Trichosporon ovoides
10322473 10322473 PRJEB50765_P_NODE_1269_length_274_cov_1.481013_g1245_i0 PRJEB50765 1269 274 1.481013 4.05797562 Puccinia graminis 5297 Fungi Fungi 139 1.88e-28   NTclustered gi|403174595|ref|XM_003333500.2| 418459 g1245 i0 82.209 2.31751824817518 163 27 59 2 77 238 457 618 Puccinia graminis f. sp. tritici CRL 75-36-700-3 guanine nucleotide-binding protein subunit beta-like protein (PGTG_14970), partial mRNA blastn 635 139 1 Eukaryota Opisthokonta Fungi Basidiomycota Pucciniomycetes Pucciniales Pucciniaceae Puccinia Puccinia graminis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;