RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB50765" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB50765 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
991330 991330 PRJEB50765_P_NODE_2881_length_163_cov_1.277778_g2857_i0 PRJEB50765 2881 163 1.277778 2.08277814 Cutibacterium 1912216 Bacteria Bacteria 257 2.68e-64   NTclustered gi|1446500593|gb|CP031442.1| 1747 g2857 i0 95.122 272.331288343558 164 6 100 2 1 163 56714 56876 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 44390 257 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
20520448 20520448 PRJEB50765_P_NODE_2257_length_189_cov_1.026316_g2233_i0 PRJEB50765 2257 189 1.026316 1.93973724 [Actinomadura] parvosata 1955412 Bacteria Bacteria 54.7 0.005   NTclustered gi|1162989368|gb|CP017717.1| 1909395 g2233 i0 100 0.153439153439153 29 0 15 0 19 47 9870514 9870486 [Actinomadura] parvosata subsp. kistnae strain ATCC 55076 chromosome, complete genome blastn 29 54.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea [Actinomadura] parvosata
25217449 25217449 PRJEB50765_P_NODE_2500_length_178_cov_1.021277_g2476_i0 PRJEB50765 2500 178 1.021277 1.81787306 Microbacteriaceae 85023 Bacteria Bacteria 283 4.909999999999999e-72   NTclustered gi|2067841284|gb|CP076352.1| 33013 g2476 i0 95.506 203.674157303371 178 7 100 1 1 178 2138059 2137883 Clavibacter michiganensis subsp. michiganensis strain VQ143 chromosome, complete genome blastn 36254 283 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter michiganensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;